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Information on SUBCLASS 3.28.1
Subclass Accession number: 3867
Subclass: 3.28.1 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 58.3 +/- -0.5
Average RMSD (Å) : 0.100 +/- 0.000

Consensus geometry
d (Å): 11 delta (°): 0-45 theta (°): 45-90 rho (°): 45-90
Consensus Sequence: WYhhPhh
(φψ)-conformation: bpabwbp
Pattern: [KR][W][Y][AG][LV][P][AI][IV]
Conservation:-0.4011.9150.679-0.742-0.7100.679-1.018-0.402
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1m7v_A_2071m7v   A207214KWYGVPIIEEES--EEbbxabwbx
1mjt_A_1981mjt   A198205KWYAVPIIEEES--EEbbxabwbx
1q2o_A_3311q2o   A331338RWYALPAVEEES--EEbbxaxwbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1m7v_A_2071m7v   A     ARGARGININE W - 208
1m7v_A_2071m7v   A     ARGARGININE Y - 209
1m7v_A_2071m7v   A     ARGARGININE P - 212
1m7v_A_2071m7v   A     ARGARGININE I - 214
1m7v_A_2071m7v   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 214
1mjt_A_1981mjt   A     ITUETHYLISOTHIOUREA P - 203
1mjt_A_1981mjt   A     ITUETHYLISOTHIOUREA I - 204
1mjt_A_1981mjt   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 205
1mjt_A_1981mjt   A     ITUETHYLISOTHIOUREA I - 205
1q2o_A_3311q2o   A     DP1L-N(OMEGA)-NITROARGININE-2,4-L-DIAMINOBUTYRIC AMIDE Y - 333
1q2o_A_3311q2o   A     DP1L-N(OMEGA)-NITROARGININE-2,4-L-DIAMINOBUTYRIC AMIDE P - 336
1q2o_A_3311q2o   A     DP1L-N(OMEGA)-NITROARGININE-2,4-L-DIAMINOBUTYRIC AMIDE A - 337
1q2o_A_3311q2o   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 338
1q2o_A_3311q2o   A     DP1L-N(OMEGA)-NITROARGININE-2,4-L-DIAMINOBUTYRIC AMIDE V - 338

Clusters included in this Subclass
CLUSTER: AR.3.248