Information on SUBCLASS 5.30.1 |
Subclass Accession number: 391
Subclass: 5.30.1 Type: HE alpha-beta DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation EC : 5.3 (>75 %) 5.3.1 (>75 %) 5.3.1.9 GO : GO:0004347 (>75 %) GO:0016853 (>75 %) GO:0016860 (>75 %) GO:0016861 (>75 %) SCOP : 53696 (>75 %) 53697 (>75 %) 53701 (>75 %) |
Number of loops: 3 Average sequence ID (%) : 21.7 +/- 18.4 Average RMSD (Å) : 0.733 +/- 0.153 Consensus geometry
|
Consensus Sequence: | XXpDpXXhV |
(φψ)-conformation: | aapaababb |
Pattern: | x | x | [ADK] | [GIL] | [ERS] | x | x | [V] | [NQS] | [AEQ] | [LTW] | [IKL] | [AN] | [RS] | [D] | [DR] | [TV] | [DPQ] | [GLV] | [V] | x | [IV] | [LT] |
Conservation: | -0.799 | -1.104 | -0.646 | -1.028 | -0.264 | -0.799 | -0.570 | 1.568 | 0.117 | -0.112 | -0.417 | -0.646 | -0.169 | 0.091 | 2.942 | 0.275 | 0.378 | -0.112 | -1.028 | 1.568 | -0.722 | 1.246 | 0.231 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1d2n_A_520 | 1d2n | A | 526 | 548 | LDDGELLVQQTKNSDRTPLVSVL | HHHHHHHHHHHHH-SS-SEEEEE | aaaaaaaaaaaaaxaababbbbb |
1mkz_A_54 | 1mkz | A | 54 | 76 | RYAIRAQVSAWIASDDVQVVLIT | HHHHHHHHHHHHHSSS--EEEEE | aaaaaaaaaaaaaxaaxabbbbb |
1o7j_A_67 | 1o7j | A | 70 | 92 | VLKLSQRVNELLARDDVDGVVIT | HHHHHHHHHHHHTSTT--EEEEE | aaaaaaaaaaaaaxaababbbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1d2n_A_520 | 1d2n | A | ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | V - 522 |
1mkz_A_54 | 1mkz | A | MSESELENOMETHIONINE | V - 73 |
1mkz_A_54 | 1mkz | A | MSESELENOMETHIONINE | L - 74 |
1mkz_A_54 | 1mkz | A | MSESELENOMETHIONINE | I - 75 |
1mkz_A_54 | 1mkz | A | MSESELENOMETHIONINE | T - 76 |
1o7j_A_67 | 1o7j | A | GOLGLYCEROL | G - 67 |
1o7j_A_67 | 1o7j | A | GOLGLYCEROL | D - 68 |
1o7j_A_67 | 1o7j | A | GOLGLYCEROL | L - 71 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1o7j_A_67 | 1o7j | A | AC3GOL BINDING SITE FOR CHAIN A | D - 68 |
Clusters included in this Subclass |
CLUSTER: HE.6.146 |