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PDB code:

Information on SUBCLASS 9.2.1

Subclass Accession number: 4231 Subclass: 9.2.1 Type: AR beta-beta link DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 9 Average sequence ID (%) : 29.3 +/- 25.3 Average RMSD (Å) : 0.567 +/- 0.158 Consensus geometry d (Å): 7 delta (°): 90-135 theta (°): 90-135 rho (°): 225-270

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1b8o_A_110	1b8o	A	110	136	TLVVTNAAGGLNPNFEVGDIMLIRDHI	EEEEEEEEEE-STT--TT-EEEEEEEE	bbbbbbxbxxaxaaxbpgxbbxxabbb
1g2o_A_114	1g2o	A	114	140	IMVLTNAAGGLRADLQVGQPVLISDHL	EEEEEEEEEE-STT--TT-EEEEEEEE	bbbbbbbbxxaxaaxbxvxwbxxabbb
1je0_A_83	1je0	A	83	109	VFIRYGTTGALVPYINLGEYIIVTGAS	EEEEEEEEEE-STT--TT-EEEEEEEE	bbbxbbbbbxabaaxbpvxbbxxaebx
1jys_A_70	1jys	A	70	96	VIINTGSAGGLAPTLKVGDIVVSDEAR	EEEEEEEEEE-STT--TT-EEEEEEEE	bbbbbebbxxaxaaxbpvxbxbxabbb
1m73_E_110	1m73	E	110	136	TLVVTNAAGGLNPKFEVGDIMLIRDHI	EEEEEEEEEE-STT--TT-EEEEEEEE	bbbbbbxbxxaxaaxbpgpbbxxabbb
1odk_A_84	1odk	A	84	110	VLVRVGTAGAASSDLAPGELIVAQGAV	EEEEEEEEEESSTTS-TT-EEEEEEEE	bbbxbbbbxxabaaxxpgxxbxxabbx
1qe5_A_129	1qe5	A	129	155	TLILTNGCGGLNQEWGAGTPVLLSDHI	EEEEEEEEEE--TTS-TT-EEEEEEEE	bbbbbbbbxbabaabxpvxxbxxabbb
1rxy_A_88	1rxy	A	88	114	TFLRIGTTGAIQPHINVGDVLVTTASV	EEEEEEEEEE-STT--TT-EEEEEEEE	bbbxbbbbbxabaaxbpgxbbbxabbx
1vhw_A_85	1vhw	A	85	111	KIIRVGSCGAVNEGIKVRDVVIGMGAC	EEEEEEEEEE-STTS-TT-EEEEEEEE	bbbxbbbbbxabaabbxvxbbbxabbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1b8o_A_110	1b8o	A	PO4PHOSPHATE ION	T - 114
1b8o_A_110	1b8o	A	PO4PHOSPHATE ION	N - 115
1b8o_A_110	1b8o	A	IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL	N - 115
1b8o_A_110	1b8o	A	PO4PHOSPHATE ION	A - 116
1b8o_A_110	1b8o	A	IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL	A - 116
1b8o_A_110	1b8o	A	PO4PHOSPHATE ION	A - 117
1b8o_A_110	1b8o	A	IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL	A - 117
1b8o_A_110	1b8o	A	IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL	G - 118
1b8o_A_110	1b8o	A	IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL	G - 119
1g2o_A_114	1g2o	A	PO4PHOSPHATE ION	T - 118
1g2o_A_114	1g2o	A	PO4PHOSPHATE ION	N - 119
1g2o_A_114	1g2o	A	PO4PHOSPHATE ION	A - 120
1g2o_A_114	1g2o	A	IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL	A - 120
1g2o_A_114	1g2o	A	PO4PHOSPHATE ION	A - 121
1g2o_A_114	1g2o	A	IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL	A - 121
1g2o_A_114	1g2o	A	IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL	G - 122
1g2o_A_114	1g2o	A	IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL	G - 123
1je0_A_83	1je0	A	PO4PHOSPHATE ION	R - 86
1je0_A_83	1je0	A	TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL	R - 86
1je0_A_83	1je0	A	PO4PHOSPHATE ION	Y - 87
1je0_A_83	1je0	A	PO4PHOSPHATE ION	G - 88
1je0_A_83	1je0	A	TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL	G - 88
1je0_A_83	1je0	A	PO4PHOSPHATE ION	T - 89
1je0_A_83	1je0	A	TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL	T - 89
1je0_A_83	1je0	A	PO4PHOSPHATE ION	T - 90
1je0_A_83	1je0	A	TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL	T - 90
1je0_A_83	1je0	A	TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL	G - 91
1jys_A_70	1jys	A	ADEADENINE	S - 76
1jys_A_70	1jys	A	ADEADENINE	A - 77
1jys_A_70	1jys	A	ADEADENINE	G - 78
1qe5_A_129	1qe5	A	PO4PHOSPHATE ION	T - 133
1qe5_A_129	1qe5	A	PO4PHOSPHATE ION	N - 134
1qe5_A_129	1qe5	A	PO4PHOSPHATE ION	G - 135
1qe5_A_129	1qe5	A	PO4PHOSPHATE ION	C - 136
1rxy_A_88	1rxy	A	GOLGLYCEROL	T - 110
1rxy_A_88	1rxy	A	GOLGLYCEROL	T - 111
1rxy_A_88	1rxy	A	GOLGLYCEROL	A - 112
1rxy_A_88	1rxy	A	GOLGLYCEROL	R - 115
1rxy_A_88	1rxy	A	GOLGLYCEROL	L - 116
1vhw_A_85	1vhw	A	ADNADENOSINE	R - 88
1vhw_A_85	1vhw	A	ADNADENOSINE	G - 90
1vhw_A_85	1vhw	A	ADNADENOSINE	S - 91
1vhw_A_85	1vhw	A	ADNADENOSINE	C - 92
1vhw_A_85	1vhw	A	ADNADENOSINE	G - 93
1vhw_A_85	1vhw	A	ADNADENOSINE	A - 94

Clusters included in this Subclass

CLUSTER: AR.8.16

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