ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 9.17.1

Subclass Accession number: 4246
Subclass: 9.17.1

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 1.4 (>50 %)  1.4.3 (>50 %)
GO : GO:0001716 (>50 %)  GO:0016638 (>75 %)  GO:0016641 (>75 %)
SCOP : 51904 (>75 %)  51905 (>75 %)  51913 (>75 %)

Number of loops: 3

Average sequence ID (%) : 70.6 +/- -23.3
Average RMSD (Å) : 0.267 +/- 0.115

Consensus geometry

d (Å): 21

delta (°): 45-90

theta (°): 45-90

rho (°): 135-180

Consensus Sequence:	LEAppRhGGRXpT
(φψ)-conformation:	bbapabpgeapbb

Pattern:	[V]	[TV]	[V]	[L]	[E]	[A]	[RS]	[DE]	[R]	[APV]	[G]	[G]	[R]	[TV]	[RY]	[T]	[LY]
Conservation:	0.181	-0.944	0.181	0.181	0.830	0.181	-1.287	0.011	0.830	-1.766	1.480	1.480	0.830	-0.963	-1.134	0.830	-0.924

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1f8r_A_58	1f8r	A	59	75	VTVLEASERPGGRVRTY	EEEE-SSSSSBTT--EE	bbbbbaxabxgeaxbbx
1reo_A_58	1reo	A	59	75	VTVLEASERAGGRVRTY	EEEE-SSSSS-TT--EE	bbbbbaxabxgeaxbbx
1s3e_A_30	1s3e	A	30	46	VVVLEARDRVGGRTYTL	EEEE-SSSSSBTT--EE	bbbbbaxabxgeabbbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1f8r_A_58	1f8r	A	FADFLAVIN-ADENINE DINUCLEOTIDE	L - 62
1f8r_A_58	1f8r	A	FADFLAVIN-ADENINE DINUCLEOTIDE	E - 63
1f8r_A_58	1f8r	A	FADFLAVIN-ADENINE DINUCLEOTIDE	A - 64
1f8r_A_58	1f8r	A	FADFLAVIN-ADENINE DINUCLEOTIDE	S - 65
1f8r_A_58	1f8r	A	FADFLAVIN-ADENINE DINUCLEOTIDE	R - 67
1f8r_A_58	1f8r	A	FADFLAVIN-ADENINE DINUCLEOTIDE	P - 68
1f8r_A_58	1f8r	A	FADFLAVIN-ADENINE DINUCLEOTIDE	G - 69
1f8r_A_58	1f8r	A	FADFLAVIN-ADENINE DINUCLEOTIDE	G - 70
1f8r_A_58	1f8r	A	FADFLAVIN-ADENINE DINUCLEOTIDE	R - 71
1f8r_A_58	1f8r	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 72
1reo_A_58	1reo	A	FADFLAVIN-ADENINE DINUCLEOTIDE	A - 68
1s3e_A_30	1s3e	A	FADFLAVIN-ADENINE DINUCLEOTIDE	L - 33
1s3e_A_30	1s3e	A	FADFLAVIN-ADENINE DINUCLEOTIDE	E - 34
1s3e_A_30	1s3e	A	FADFLAVIN-ADENINE DINUCLEOTIDE	A - 35
1s3e_A_30	1s3e	A	FADFLAVIN-ADENINE DINUCLEOTIDE	R - 36
1s3e_A_30	1s3e	A	FADFLAVIN-ADENINE DINUCLEOTIDE	R - 38
1s3e_A_30	1s3e	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 39
1s3e_A_30	1s3e	A	FADFLAVIN-ADENINE DINUCLEOTIDE	G - 40
1s3e_A_30	1s3e	A	FADFLAVIN-ADENINE DINUCLEOTIDE	G - 41
1s3e_A_30	1s3e	A	FADFLAVIN-ADENINE DINUCLEOTIDE	R - 42
1s3e_A_30	1s3e	A	FADFLAVIN-ADENINE DINUCLEOTIDE	T - 43

Clusters included in this Subclass

CLUSTER: AR.10.68