ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 10.3.1

Subclass Accession number: 4256
Subclass: 10.3.1

PSSM

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 7

Average sequence ID (%) : 41.4 +/- 29.9
Average RMSD (Å) : 0.443 +/- 0.151

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 45-90

rho (°): 180-225

Consensus Sequence:	EhhhpXXXhNpcDh
(φψ)-conformation:	pbppbaaapbaabb

Pattern:	x	[ep]	x	[ailp]	[lpv]	[adkns]	x	x	[as]	[flv]	[kn]	[npst]	[gn]	[dt]	[aci]	[fl]	[ilv]	[l]	[dk]
Conservation:	-1.074	0.596	-0.441	-1.343	-0.869	-1.022	-0.999	-1.687	0.608	-0.270	1.219	-0.632	0.855	0.877	0.042	1.150	0.545	1.677	0.766

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1d0n_A_172	1d0n	A	174	192	TEVPVSWESFNNGDCFILD	EEE-SSGGG--SSSEEEEE	bxbpxbaaaxbaaxbbbxx
1d0n_A_549	1d0n	A	552	570	VEIIPKAGALNSNDAFVLK	EEE---GGG--SSSEEEEE	bxbxpbaaNxbaaxbbbbx
1j72_A_148	1j72	A	150	168	TERALNWDSFNTGDCFILD	EEE-SSGGG-BTTSEEEEE	bpbxxbaaaxbaabbbbbb
1kcq_A_171	1kcq	A	174	192	TEVPVSWESFNNGDCFILD	EEE-SSGGG--TTSEEEEE	bxbpxbaaaxbaabbbbxx
1m2o_A_639	1m2o	A	639	657	QPVLLDSISVKPNTILLLD	EE--SBGGG--TT-EEEEE	bxbpxbaaaxbaabbbbbb
1p8x_A_549	1p8x	A	552	570	VEVLPKAGALNSNDAFVLK	EEE--SGGG-BTTSEEEEE	bxbxxbaaaxbaabbbbbb
1svy_*_173	1svy	-	175	193	AEVPLATSSLNSGDCFLLD	EEE-SSGGG-BTTSEEEEE	bxbpxbaaaxbaabbbbxx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1kcq_A_171	1kcq	A	CDCADMIUM ION	E - 175
1kcq_A_171	1kcq	A	CDCADMIUM ION	N - 184
1kcq_A_171	1kcq	A	CDCADMIUM ION	G - 186
1kcq_A_171	1kcq	A	CDCADMIUM ION	D - 187
1kcq_A_171	1kcq	A	CDCADMIUM ION	C - 188
1p8x_A_549	1p8x	A	CACALCIUM ION	N - 562
1p8x_A_549	1p8x	A	CACALCIUM ION	N - 564
1p8x_A_549	1p8x	A	CACALCIUM ION	D - 565
1p8x_A_549	1p8x	A	CACALCIUM ION	A - 566

Clusters included in this Subclass

CLUSTER: AR.11.5