ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 13.6.1

Subclass Accession number: 4307
Subclass: 13.6.1

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
GO : GO:0003676 (>75 %) GO:0003723 (>75 %) GO:0008168 (>50 %) GO:0008757 (>50 %) GO:0016741 (>50 %)
SCOP : 53334 (>75 %) 53335 (>75 %) 53342 (>75 %)

Number of loops: 3

Average sequence ID (%) : 78.2 +/- -41.0
Average RMSD (Å) : 0.233 +/- 0.058

Consensus geometry

d (Å): 15

delta (°): 90-135

theta (°): 90-135

rho (°): 135-180

Consensus Sequence:	GDApKPpEYXXhVXKVD
(φψ)-conformation:	bbaabaaaaaaapppba

Pattern:	[I]	[IV]	[P]	[I]	[L]	[G]	[D]	[A]	[NT]	[K]	[P]	[EQ]	[E]	[Y]	[AR]	[AN]	[IL]	[V]	[EPT]	[K]	[V]	[D]	[V]	[I]	[FY]	[E]
Conservation:	-0.217	-0.528	1.678	-0.217	-0.217	1.046	1.046	-0.217	-1.016	0.414	1.678	-0.532	0.414	1.678	-1.624	-1.817	-0.848	-0.217	-1.972	0.414	-0.217	1.046	-0.217	-0.217	0.246	0.414

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1g8a_A_124	1g8a	A	124	149	IVPILGDATKPEEYRALVPKVDVIFE	EEEEE--TT-GGGGTTT---EEEEEE	bbwbxbxaabaaaaaaaxxxbabbbb
1g8s_A_124	1g8s	A	124	149	IIPILGDANKPQEYANIVEKVDVIYE	EEEEE--TT-GGGGTTT---EEEEEE	bbwbxbbaabaaaaaaaxxpbabbbb
1pry_A_124	1pry	A	124	149	IIPILGDATKPEEYRALVTKVDVIFE	EEEEE--TTSGGGGGGG---EEEEEE	bbwbxbbaabaaaaaaabbpbabbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1g8s_A_124	1g8s	A	METMETHIONINE	Y - 148

Clusters included in this Subclass