Information on SUBCLASS 34.1.1 |
Subclass Accession number: 4347
Subclass: 34.1.1 Type: AR beta-beta link DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0005489 (>75 %) SCOP : 57769 (>75 %) 57802 (>75 %) 57803 (>75 %) |
Number of loops: 6 Average sequence ID (%) : 69.7 +/- 17.2 Average RMSD (Å) : 0.317 +/- 0.117 Consensus geometry
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Consensus Sequence: | YDXXXGDPDcGhpPGTcFpphPDDWVCPhCGhhKppFE |
(φψ)-conformation: | pbaaaebaaalbppgppaaappaapbpaaalppaaabb |
Pattern: | x | [Y] | [DN] | [EP] | [ADE] | [ADEK] | [G] | [D] | [P] | [D] | [DNS] | [G] | [IV] | [KNS] | [P] | [G] | [T] | [ADK] | [F] | [EK] | [DE] | [ILV] | [P] | [AD] | [D] | [W] | [AV] | [C] | [P] | [ILV] | [C] | [G] | [AV] | [GPS] | [K] | [DS] | [AEQ] | [F] | [E] | [EKP] |
Conservation: | -1.442 | 1.003 | -0.290 | -0.592 | -1.218 | -1.344 | 0.612 | 0.612 | 1.003 | 0.612 | -0.769 | 0.612 | -0.361 | -0.996 | 1.003 | 0.612 | 0.222 | -1.390 | 0.612 | -0.538 | -0.185 | -0.679 | 1.003 | -0.957 | 0.612 | 2.563 | -0.902 | 1.783 | 1.003 | -0.669 | 1.783 | 0.612 | -0.928 | -1.229 | 0.222 | -0.728 | -1.037 | 0.612 | 0.222 | -1.065 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1brf_A_11 | 1brf | A | 11 | 50 | IYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEK | EEETTT-BGGGTB-TT--GGGS-TT-B-TTT--BGGGEEE | bxbaaaebaaavbxpgxxaaapwaaxbpaaavxxaaabbx |
1iro_*_12 | 1iro | - | 12 | 51 | IYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEE | EE-TTT-BGGGTB-TT--GGGS-TT-B-TTT--BGGGEEE | bxbaaaebaaavbxpvxxaaaxpaaxbpaaavxxaaaxbx |
1iu5_A_11 | 1iu5 | A | 11 | 50 | IYDEDAGDPDNGVSPGTKFEEIPDDWVCPICGAPKSEFEK | EEETTT-BGGGTB-TT--GGGS-TT-B-TTT--BGGGEEE | bxbaaaebaaavbxpvxxaaaxpaaxbpaaavxxaaabbx |
1rdg_*_12 | 1rdg | - | 12 | 51 | EYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKDAFEK | EE-TTT-BGGGTB-TT--GGGS-TT-B-TTT--BGGGEEE | bxbaaaebaaavbxpvxxaaaxxaaxbpaaavxxaaaxbx |
2rdv_A_12 | 2rdv | A | 12 | 51 | EYDPAEGDPDNGVKPGTAFEDVPADWVCPICGAPKSEFEP | EE-TTT-BGGGTB-TT--GGGS-TT-B-TTT--BGGGEEE | bxbaaaebaaavxxxvxxaaaxpaaxbxaaavpxaaaxbp |
5rxn_*_12 | 5rxn | - | 12 | 51 | IYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVGKDEFEE | EE-TTT-BGGGTB-TT--GGGS-TT-B-TTT--BGGGEEE | bxbaaaebaaavbxpvxxaaaxpaaxbpaaavxxaaaxbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1brf_A_11 | 1brf | A | FEFE (III) ION | C - 38 |
1brf_A_11 | 1brf | A | FEFE (III) ION | P - 39 |
1brf_A_11 | 1brf | A | FEFE (III) ION | I - 40 |
1brf_A_11 | 1brf | A | FEFE (III) ION | C - 41 |
1brf_A_11 | 1brf | A | FEFE (III) ION | G - 42 |
1brf_A_11 | 1brf | A | FEFE (III) ION | A - 43 |
1brf_A_11 | 1brf | A | FEFE (III) ION | F - 48 |
1iro_*_12 | 1iro | * | FEFE (III) ION | C - 39 |
1iro_*_12 | 1iro | * | FEFE (III) ION | P - 40 |
1iro_*_12 | 1iro | * | FEFE (III) ION | L - 41 |
1iro_*_12 | 1iro | * | FEFE (III) ION | C - 42 |
1iro_*_12 | 1iro | * | FEFE (III) ION | G - 43 |
1iro_*_12 | 1iro | * | FEFE (III) ION | V - 44 |
1iro_*_12 | 1iro | * | FEFE (III) ION | F - 49 |
1rdg_*_12 | 1rdg | * | FEFE (III) ION | V - 41 |
1rdg_*_12 | 1rdg | * | FEFE (III) ION | A - 44 |
2rdv_A_12 | 2rdv | A | FEFE (III) ION | I - 41 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
2rdv_A_12 | 2rdv | A | FEAFE COORDINATION SITE, CHAIN A. | C - 39 |
2rdv_A_12 | 2rdv | A | FEAFE COORDINATION SITE, CHAIN A. | C - 42 |
Clusters included in this Subclass |
CLUSTER: AR.34.0 |
CLUSTER: AR.35.0 |