Information on SUBCLASS 1.2.24 |
Subclass Accession number: 4442
Subclass: 1.2.24 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 43.2 +/- 28.1 Average RMSD (Å) : 0.433 +/- 0.208 Consensus geometry
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Consensus Sequence: | LhpXc |
(φψ)-conformation: | aabaa |
Pattern: | x | [A] | x | [IV] | [GK] | [IV] | [AI] | x | [KS] | [HN] | [L] | [AG] | [DS] | [EP] | [GK] | [KQ] | [M] | [LV] | [A] | [EQ] | [LM] | [KR] | [AS] | [FV] | [GV] | [SV] | [AR] |
Conservation: | -1.381 | 1.223 | -1.590 | 0.789 | -0.722 | 0.789 | -0.947 | -1.172 | -0.304 | 1.240 | 1.223 | -0.062 | -0.062 | -0.095 | -0.722 | 0.355 | 2.092 | -0.079 | 1.223 | 0.906 | 0.580 | 0.790 | -0.079 | -0.529 | -1.365 | -1.381 | -0.722 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1jl6_A_53 | 1jl6 | A | 63 | 89 | LAQIGVAVSHLGDEGKMVAEMKAVGVR | HHHHHHHHHTTTSHHHHHHHHHHHHHH | aaaaaaaaaaaabaaaaaaaaaaaaaa |
1qop_A_235 | 1qop | A | 235 | 261 | SAIVKIIEKNLASPKQMLAELRSFVSA | HHHHHHHHHTTT-HHHHHHHHHHHHHH | aaaaaaaaaaaabaaaaaaaaaaaaaa |
2hbg_*_53 | 2hbg | - | 63 | 89 | LAQIGVAVSHLGDEGKMVAQMKAVGVR | HHHHHHHHHTTT-HHHHHHHHHHHHHH | aaaaaaaaaaaabaaaaaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1jl6_A_53 | 1jl6 | A | HEMPROTOPORPHYRIN IX CONTAINING FE | L - 58 |
1jl6_A_53 | 1jl6 | A | CNCYANIDE GROUP | L - 58 |
1jl6_A_53 | 1jl6 | A | CNCYANIDE GROUP | G - 59 |
1jl6_A_53 | 1jl6 | A | HEMPROTOPORPHYRIN IX CONTAINING FE | K - 61 |
1jl6_A_53 | 1jl6 | A | HEMPROTOPORPHYRIN IX CONTAINING FE | V - 62 |
1jl6_A_53 | 1jl6 | A | CNCYANIDE GROUP | V - 62 |
1jl6_A_53 | 1jl6 | A | HEMPROTOPORPHYRIN IX CONTAINING FE | L - 63 |
1jl6_A_53 | 1jl6 | A | HEMPROTOPORPHYRIN IX CONTAINING FE | Q - 65 |
1jl6_A_53 | 1jl6 | A | HEMPROTOPORPHYRIN IX CONTAINING FE | I - 66 |
1jl6_A_53 | 1jl6 | A | HEMPROTOPORPHYRIN IX CONTAINING FE | M - 83 |
1jl6_A_53 | 1jl6 | A | HEMPROTOPORPHYRIN IX CONTAINING FE | V - 86 |
1jl6_A_53 | 1jl6 | A | HEMPROTOPORPHYRIN IX CONTAINING FE | R - 89 |
1qop_A_235 | 1qop | A | IPLINDOLE-3-PROPANOL PHOSPHATE | S - 235 |
1qop_A_235 | 1qop | A | IPLINDOLE-3-PROPANOL PHOSPHATE | A - 236 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1qop_A_235 | 1qop | A | IPLSUBSTRATE ANALOG BOUND TO THE ALPHA ACTIVE SITE. | S - 235 |
Clusters included in this Subclass |
CLUSTER: HH.5.126 |