ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.1.8

Subclass Accession number: 4508
Subclass: 2.1.8

PSSM

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 12

Average sequence ID (%) : 9.1 +/- 13.1
Average RMSD (Å) : 0.533 +/- 0.098

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	XXXpXX
(φψ)-conformation:	aappaa

Pattern:	x	x	x	x	x	[DENPS]	x	[adegqs]	[fltvy]	x
Conservation:	-0.706	-0.763	-0.865	-0.017	0.158	2.308	-0.379	0.964	0.149	-0.850

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1dfm_A_11	1dfm	A	11	20	ADEILNPQLW	HHHHS-HHHH	aaaaxxaaaa
1fxx_A_269	1fxx	A	270	279	PLLELDSDTL	HHHHS-HHHH	aaaaxxaaaa
1i5p_A_25	1i5p	A	25	34	SFEHKSLDTI	HHHHS-HHHH	aaaaxxaaaa
1j20_A_273	1j20	A	286	295	ESLTLDREVL	HHHHS-HHHH	aaaaxxaaaa
1jqe_A_250	1jqe	A	250	259	FNATAPPDLR	HHHHS-HHHH	aaaaxxaaaa
1k92_A_294	1k92	A	307	316	LTGIHNEDTI	HHHHS-HHHH	aaaabxaaaa
1m2r_A_15	1m2r	A	15	24	VNVLRPKEYW	HHHHS-HHHH	aaaabwaaaa
1n1c_A_145	1n1c	A	146	155	LCCHSENSVQ	HHHHS-HHHH	aaaabxaaaa
1p2z_A_19	1p2z	A	19	28	ASEYLSPGLV	HHHHS-HHHH	aaaaxpaaaa
1pk5_A_432	1pk5	A	435	444	IISHTEVAFN	HHHTS-HHHH	aaaabxaaaa
262l_A_95	262l	A	98	107	VYDSLDAVRR	HHHH--HHHH	aaaaxbaaaa
2dpm_A_108	2dpm	A	108	117	RIDMMSEVQR	HHHHS-HHHH	aaaaxxaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1dfm_A_11	1dfm	A	MSESELENOMETHIONINE	E - 25
1dfm_A_11	1dfm	A	MSESELENOMETHIONINE	T - 26
1dfm_A_11	1dfm	A	CACALCIUM ION	T - 26
1dfm_A_11	1dfm	A	MSESELENOMETHIONINE	L - 27
1dfm_A_11	1dfm	A	CACALCIUM ION	L - 27
1dfm_A_11	1dfm	A	MSESELENOMETHIONINE	L - 28
1dfm_A_11	1dfm	A	CACALCIUM ION	L - 28
1j20_A_273	1j20	A	AS1ARGININOSUCCINATE	Y - 310
1n1c_A_145	1n1c	A	MSESELENOMETHIONINE	H - 145
1n1c_A_145	1n1c	A	MSESELENOMETHIONINE	L - 146
1n1c_A_145	1n1c	A	MSESELENOMETHIONINE	C - 147
1n1c_A_145	1n1c	A	MSESELENOMETHIONINE	C - 148
1n1c_A_145	1n1c	A	MSESELENOMETHIONINE	V - 154
1n1c_A_145	1n1c	A	MSESELENOMETHIONINE	Q - 155
1n1c_A_145	1n1c	A	MSESELENOMETHIONINE	L - 156
1n1c_A_145	1n1c	A	MSESELENOMETHIONINE	F - 158
1n1c_A_145	1n1c	A	MSESELENOMETHIONINE	L - 159
1n1c_A_145	1n1c	A	MSESELENOMETHIONINE	C - 162
2dpm_A_108	2dpm	A	HGMERCURY (II) ION	I - 121
2dpm_A_108	2dpm	A	HGMERCURY (II) ION	L - 122
2dpm_A_108	2dpm	A	HGMERCURY (II) ION	L - 125

Clusters included in this Subclass

CLUSTER: HH.2.62