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Information on SUBCLASS 3.5.4
Subclass Accession number: 4707
Subclass: 3.5.4 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 30.3 +/- 21.8
Average RMSD (Å) : 0.329 +/- 0.125

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XXAXpXX
(φψ)-conformation: aapabaa
Pattern: [RST][AS][ILV]x[dgkqr][A][ADEP][DENS][LPY]x[AEKS][AV][AILY][AKRS][AEGKQ][FILV]x
Conservation:-0.1251.0191.363-1.127-1.5202.157-0.5340.8390.089-1.045-0.2481.012-0.7140.031-0.8230.271-0.645
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dbt_A_2151dbt   A215231RSITKAEDPVKAYKAVRHHHHTSS-HHHHHHHHHaaaaaxabaaaaaaaaa
1dvj_A_2031dvj   A203219RSIYLADNPAAAAAGIIHHHHTSSSHHHHHHHHHaaaaaxabaaaaaaaaa
1h1y_A_2011h1y   A201217SSIFGAAEPGEVISALRHHHHTSS-HHHHHHHHHaaaaaxabaaaaaaaaa
1q6o_A_1921q6o   A192208RSIRDAASPVEAARQFKHHHHTSS-HHHHHHHHHaaaaaxabaaaaaaaaa
1rpx_A_2081rpx   A208224SAVFGAPDYAEAIKGIKHHHHTSS-HHHHHHHHHaaaaaxabaaaaaaaaa
1vc4_A_2371vc4   A237253TSLMRAPDLEAALRELVHHHHTSS-HHHHHHHHHaaaaaxabaaaaaaaaa
2tps_A_2092tps   A209225SAISQAEDPESAARKFRHHHHTSS-HHHHHHHHHaaaaaxabaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dbt_A_2151dbt   A     U5PURIDINE-5'-MONOPHOSPHATE R - 215
1dbt_A_2151dbt   A     U5PURIDINE-5'-MONOPHOSPHATE S - 216
1dbt_A_2151dbt   A     U5PURIDINE-5'-MONOPHOSPHATE T - 218
1dvj_A_2031dvj   A     UP66-AZA URIDINE 5'-MONOPHOSPHATE R - 203
1dvj_A_2031dvj   A     UP66-AZA URIDINE 5'-MONOPHOSPHATE S - 204
1dvj_A_2031dvj   A     UP66-AZA URIDINE 5'-MONOPHOSPHATE Y - 206
1q6o_A_1921q6o   A     LG6L-GULURONIC ACID 6-PHOSPHATE R - 192
1q6o_A_1921q6o   A     LG6L-GULURONIC ACID 6-PHOSPHATE S - 193
1q6o_A_1921q6o   A     LG6L-GULURONIC ACID 6-PHOSPHATE R - 195
2tps_A_2092tps   A     TPSTHIAMIN PHOSPHATE S - 209
2tps_A_2092tps   A     TPSTHIAMIN PHOSPHATE A - 210
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h1y_A_2011h1y   A SO1SO4 BINDING SITE FOR CHAIN AS - 201

Clusters included in this Subclass
CLUSTER: HH.3.127
CLUSTER: HH.4.43