ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 3.6.5

Subclass Accession number: 4718
Subclass: 3.6.5

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 3

Average sequence ID (%) : 11.1 +/- 10.8
Average RMSD (Å) : 1.000 +/- 0.100

Consensus geometry

d (Å): 15

delta (°): 45-90

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	XpXpcXX
(φψ)-conformation:	aabapaa

Pattern:	x	[SY]	[NSY]	x	x	[ER]	[FV]	x	[EKT]	[EL]	[AIT]	[GIV]	[KPQ]	[NQT]	[ILT]	[EQT]	[DN]	[EPQ]	x	[KL]	[KR]	[AER]	[ADK]	[ALM]	[EPS]	x	[AV]
Conservation:	-1.195	0.147	-0.379	-0.137	-1.059	1.494	0.555	0.165	-0.107	-0.687	-0.651	-1.059	0.165	0.029	-0.107	0.165	2.718	0.437	-1.467	-0.137	2.594	-0.515	-0.923	-0.107	-0.243	-0.515	0.821

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1dq3_A_303	1dq3	A	303	329	YSSLLRFYELIGKNLQNEEKREKLEKV	HHHHHHHHHHTGGG-S-HHHHHHHHHH	aaaaaaaaaaaaaaxaxaaaaaaaaaa
1oc7_A_103	1oc7	A	103	129	NYYRSEVHTLAIPQITDPALRAAASAV	HHHHHHHHHTTGGG---HHHHHHHHHH	aaaaaaaaaaaaaabaxaaaaaaaaae
1rke_A_41	1rke	A	51	77	VSNLVRVGKETVQTTEDQILKRDMPPA	HHHHHHHHHTTTTT---HHHHHHHHHH	aaaaaaaaaaaaaabaxaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1oc7_A_103	1oc7	A	DMFDMF BINDING SITE FOR CHAIN A	R - 106

Clusters included in this Subclass