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Information on SUBCLASS 3.7.3
Subclass Accession number: 4721
Subclass: 3.7.3 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 20.5 +/- 21.6
Average RMSD (Å) : 0.900 +/- 0.187

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XXcGpXp
(φψ)-conformation: aallpaa
Pattern: x[AEL][KLT][AKR]x[AEG][gl][ailv]x[AFKL][AKT][FGK][GN][HQS]x[ehy][AV][ae]x
Conservation:-0.807-0.490-0.0131.060-0.9060.094-1.184-0.512-0.657-0.8960.462-0.6542.8541.0310.0670.3861.155-0.034-0.957
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bkj_A_541bkj   A5472SEKRNELAQFAGNQAYVESHHHHHHHHHHTTS-THHHHaaaaaaaaaaavlxaaaaa
1emy_*_591emy   -6886VLTALGGILKKKGHHEAEIHHHHHHHHHHTTT--HHHHaaaaaaaaaaalgxaaaaa
1f5v_A_541f5v   A5472KALREELVTLTGGQKHVAQHHHHHHHHHHTTS-THHHHaaaaaaaaaaavvxaaaaa
1myt_*_591myt   -6886VLKKLGELLKAKGSHAAILHHHHHHHHHHTTT--HHHHaaaaaaaaaaalvbaaaaa
1nox_*_601nox   -6078PATKRALREAAFGQAHVEEHHHHHHHHHHTTT-THHHHaaaaaaaaaaalvxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bkj_A_541bkj   A     FMNFLAVIN MONONUCLEOTIDE A - 64
1bkj_A_541bkj   A     FMNFLAVIN MONONUCLEOTIDE Q - 67
1bkj_A_541bkj   A     PO4PHOSPHATE ION Q - 67
1bkj_A_541bkj   A     FMNFLAVIN MONONUCLEOTIDE Y - 69
1emy_*_591emy   *     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 64
1emy_*_591emy   *     CYNCYANIDE ION Q - 64
1emy_*_591emy   *     HEMPROTOPORPHYRIN IX CONTAINING FE T - 67
1emy_*_591emy   *     CYNCYANIDE ION T - 67
1emy_*_591emy   *     HEMPROTOPORPHYRIN IX CONTAINING FE V - 68
1emy_*_591emy   *     CYNCYANIDE ION V - 68
1emy_*_591emy   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 69
1emy_*_591emy   *     HEMPROTOPORPHYRIN IX CONTAINING FE A - 71
1emy_*_591emy   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 72
1emy_*_591emy   *     HEMPROTOPORPHYRIN IX CONTAINING FE I - 75
1emy_*_591emy   *     HEMPROTOPORPHYRIN IX CONTAINING FE P - 88
1emy_*_591emy   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 89
1emy_*_591emy   *     HEMPROTOPORPHYRIN IX CONTAINING FE S - 92
1emy_*_591emy   *     HEMPROTOPORPHYRIN IX CONTAINING FE H - 93
1emy_*_591emy   *     CYNCYANIDE ION H - 93
1f5v_A_541f5v   A     FMNFLAVIN MONONUCLEOTIDE T - 64
1f5v_A_541f5v   A     FMNFLAVIN MONONUCLEOTIDE H - 69
1myt_*_591myt   *     HEMPROTOPORPHYRIN IX CONTAINING FE H - 64
1myt_*_591myt   *     HEMPROTOPORPHYRIN IX CONTAINING FE K - 71
1myt_*_591myt   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 75
1nox_*_601nox   *     FMNFLAVIN MONONUCLEOTIDE Q - 73
1nox_*_601nox   *     FMNFLAVIN MONONUCLEOTIDE H - 75
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1bkj_A_541bkj   A ASAFMN COFACTOR BINDING SITE-CHAIN A.Q - 67

Clusters included in this Subclass
CLUSTER: HH.4.130