Information on SUBCLASS 3.8.6 |
Subclass Accession number: 4728
Subclass: 3.8.6 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 10.0 +/- 13.6 Average RMSD (Å) : 0.833 +/- 0.306 Consensus geometry
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Consensus Sequence: | pXXXXXX |
(φψ)-conformation: | aapppaa |
Pattern: | [FLV] | [FL] | [ER] | [EQR] | x | x | x | [NPS] | x | [EP] | x | [ALV] | [AEL] | [EQR] | [ALV] | [FHI] | [GKL] | [LT] | [AT] | [LTY] |
Conservation: | 0.141 | 1.080 | 1.399 | 0.983 | 0.373 | -0.942 | -1.062 | 0.021 | -0.821 | 1.814 | -1.423 | -0.100 | -1.182 | 0.983 | -0.100 | -0.340 | -1.663 | 0.451 | 0.970 | -0.581 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1jtv_A_209 | 1jtv | A | 225 | 244 | VFREAAQNPEEVAEVFLTAL | HHHHH-B-HHHHHHHHHHHH | aaaaaxxxaaaaaaaaaaaa |
1k87_A_103 | 1k87 | A | 110 | 129 | LLEQARLPQPVAEQAHKLAY | HHHHH---HHHHHHHHHHHH | aaaaaxxpaaaaaaaaaaaa |
1s3e_A_481 | 1s3e | A | 481 | 500 | FLERHLPSVPGLLRLIGLTT | HHHHHS--HHHHHHHHHHHH | aaaaaxxxaaaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1jtv_A_209 | 1jtv | A | TESTESTOSTERONE | Y - 218 |
1jtv_A_209 | 1jtv | A | TESTESTOSTERONE | H - 221 |
1jtv_A_209 | 1jtv | A | TESTESTOSTERONE | S - 222 |
1jtv_A_209 | 1jtv | A | TESTESTOSTERONE | K - 223 |
1jtv_A_209 | 1jtv | A | TESTESTOSTERONE | V - 225 |
1jtv_A_209 | 1jtv | A | TESTESTOSTERONE | F - 226 |
1k87_A_103 | 1k87 | A | TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | A - 106 |
1k87_A_103 | 1k87 | A | TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | M - 109 |
1k87_A_103 | 1k87 | A | TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | L - 110 |
1k87_A_103 | 1k87 | A | TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | Q - 113 |
1k87_A_103 | 1k87 | A | GOLGLYCEROL | A - 121 |
1k87_A_103 | 1k87 | A | GOLGLYCEROL | E - 122 |
1k87_A_103 | 1k87 | A | GOLGLYCEROL | A - 124 |
1k87_A_103 | 1k87 | A | GOLGLYCEROL | H - 125 |
Clusters included in this Subclass |
CLUSTER: HH.2.253 |