Information on SUBCLASS 4.1.5 |
Subclass Accession number: 4774
Subclass: 4.1.5 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 14.9 +/- 20.0 Average RMSD (Å) : 1.033 +/- 0.404 Consensus geometry
|
Consensus Sequence: | hcGphXXp |
(φψ)-conformation: | aalabpaa |
Pattern: | [LPV] | [ADE] | x | [TW] | x | [GW] | x | [VW] | [AF] | [DGK] | [G] | [ERS] | [FI] | [PT] | [AK] | [DEK] | [ENQ] | [VWY] | x | [GKQ] | [EKY] | [VW] | [IW] | [AES] | x | x | x | [EGK] | [GIY] |
Conservation: | -0.873 | -0.365 | -0.788 | 1.652 | -0.611 | 1.758 | -0.449 | -0.171 | 0.045 | -0.704 | 3.109 | -0.449 | 0.370 | 0.979 | 0.102 | 0.228 | 0.228 | 0.059 | -0.873 | -0.619 | -0.534 | 1.190 | 1.190 | -0.365 | -0.280 | -0.788 | -1.043 | -0.619 | -1.381 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1o8a_A_457 | 1o8a | A | 464 | 492 | VDQWRWRVFDGSITKENYNQEWWSLRLKY | HHHHHHHHHTTSS-TTTHHHHHHHHHHHH | aaaaaaaaaavabxaaaaaaaaaaaaaaa |
1r42_A_449 | 1r42 | A | 456 | 484 | LEKWRWMVFKGEIPKDQWMKKWWEMKREI | HHHHHHHHHHT-S-GGGHHHHHHHHHHHH | aaaaaaaaaavabwaaaaaaaaaaaaaaa |
1rc2_A_64 | 1rc2 | A | 64 | 92 | PAVTIGLWAGGRFPAKEVVGYVIAQVVGG | HHHHHHHHHTT-S-TTTHHHHHHHHHHHH | aaaaaaaaaavabxaaaaaaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1o8a_A_457 | 1o8a | A | NXAN-CARBOXYALANINE | F - 457 |
1o8a_A_457 | 1o8a | A | NXAN-CARBOXYALANINE | F - 460 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1o8a_A_457 | 1o8a | A | CL1CL BINDING SITE FOR CHAIN A | W - 485 |
1o8a_A_457 | 1o8a | A | CL1CL BINDING SITE FOR CHAIN A | W - 486 |
1o8a_A_457 | 1o8a | A | CL1CL BINDING SITE FOR CHAIN A | R - 489 |
Clusters included in this Subclass |
CLUSTER: HH.8.88 |