Logo
Information on SUBCLASS 4.2.2
Subclass Accession number: 4778
Subclass: 4.2.2 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 23.2 +/- 24.1
Average RMSD (Å) : 0.920 +/- 0.383

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 90-135 rho (°): 180-225
Consensus Sequence: ppDPpXpX
(φψ)-conformation: aabaapaa
Pattern: [amv][AILV][ekq][vy][DK][DP][DEKTY][ACS][ekn][GNPQ][A][DEKR][ADE][FVY]x[aek][lt][AFG][EHRS][EKR][GITV]x
Conservation:-0.5640.127-0.342-0.1141.6612.108-0.9440.316-0.577-0.6802.2030.237-0.1621.215-0.722-0.918-0.940-0.455-0.2550.789-0.865-1.115
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cp2_A_2241cp2   A224245VIEYDPTCEQAEEYRELARKVDHHHH-TTSHHHHHHHHHHHHHHaaaabaaxaaaaaaaaaaaaaa
1fp6_A_2271fp6   A227248VIEYDPKAKQADEYRALARKVVHHHH-TTSHHHHHHHHHHHHHHaaaabaaxaaaaaaaaaaaaaa
1g3q_A_2131g3q   A213234AVKYKPESKGAKAFVKLAEEIEHHHHSTTSHHHHHHHHHHHHHHaaaabaaxaaaaaaaaaaaaaa
1g8q_A_1161g8q   A133154QAVVDDDANNAKAVVKTFHETLHHHH-TT-HHHHHHHHHHHHHHaaaabaaxaaaaaaaaaaaaaa
1rke_A_681rke   A94115MLQSDPYSVPARDYLIDGSRGIHHTT-TT-HHHHHHHHHHHHHHaaaabaapaaaaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1fp6_A_2271fp6   A     ADPADENOSINE-5'-DIPHOSPHATE Q - 236
1fp6_A_2271fp6   A     ADPADENOSINE-5'-DIPHOSPHATE Y - 240
1g3q_A_2131g3q   A     ADPADENOSINE-5'-DIPHOSPHATE F - 226

Clusters included in this Subclass
CLUSTER: HH.5.134