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Information on SUBCLASS 2.2.8
Subclass Accession number: 478
Subclass: 2.2.8 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 12

Average sequence ID (%) : 6.8 +/- 10.7
Average RMSD (Å) : 0.408 +/- 0.202

Consensus geometry
d (Å): 5 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XXXpXX
(φψ)-conformation: bbaabb
Pattern: xx[dgnstv][adkrst][dehknqsty][eknrstw][aikltv]x
Conservation:-1.000-1.505-0.1731.0950.5850.0850.993-1.081
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1d7p_M_21961d7p   M21962203FTNMFATWEEETTEEExbbaabbx
1eu3_A_181eu3   A2734FKTSHNLVEEETTEEEbbbaabbb
1g0x_A_1521g0x   A152158.RGSSRAI.EETTEEE.bbaabbb
1gkp_A_91gkp   A1017IITADSRYEEETTEEExbbaabbb
1is3_A_291is3   A3542GESTDSIAEEETTEEEbabaabba
1ju3_A_2931ju3   A293298.RNADRK..EETTEE..bbaabb.
1k38_A_1931k38   A195202EAGRNWILEEETTEEEbbbaabbb
1mhm_A_751mhm   A7683FVYSYKIIEEETTEEEbbbaabbb
1n6m_A_4461n6m   A446451.GVPESV..EETTEE..ebaabx.
1qba_*_2891qba   -292299KIGKKEAQEE-SS-EEbbbaabbb
1zxq_*_411zxq   -4653DEQAQWKHEEETTEEEbbbaabbb
7taa_*_3857taa   -388395YKDDTTIAEEETTEEEbbbaabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d7p_M_21961d7p   M     GOLGLYCEROL F - 2196
1d7p_M_21961d7p   M     GOLGLYCEROL N - 2198
1d7p_M_21961d7p   M     GOLGLYCEROL F - 2200
1d7p_M_21961d7p   M     GOLGLYCEROL A - 2201
1d7p_M_21961d7p   M     GOLGLYCEROL W - 2203
1is3_A_291is3   A     LATLACTOSE R - 29
1is3_A_291is3   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID S - 31
1is3_A_291is3   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID N - 33
1is3_A_291is3   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID T - 38
1is3_A_291is3   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID D - 39
1is3_A_291is3   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID I - 41
1is3_A_291is3   A     LATLACTOSE H - 44
1is3_A_291is3   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID H - 44
1is3_A_291is3   A     LATLACTOSE D - 46
1is3_A_291is3   A     LATLACTOSE R - 48
1k38_A_1931k38   A     KCXLYSINE NZ-CARBOXYLIC ACID K - 205
1k38_A_1931k38   A     FMTFORMIC ACID K - 205
1k38_A_1931k38   A     FMTFORMIC ACID T - 206
1k38_A_1931k38   A     FMTFORMIC ACID G - 207
1k38_A_1931k38   A     FMTFORMIC ACID W - 208
1mhm_A_751mhm   A     PVLPYRUVOYL GROUP L - 75
1zxq_*_411zxq   *     NAGN-ACETYL-D-GLUCOSAMINE N - 41
1zxq_*_411zxq   *     NAGN-ACETYL-D-GLUCOSAMINE D - 46
1zxq_*_411zxq   *     NAGN-ACETYL-D-GLUCOSAMINE Q - 48
1zxq_*_411zxq   *     NAGN-ACETYL-D-GLUCOSAMINE Q - 50
1zxq_*_411zxq   *     NAGN-ACETYL-D-GLUCOSAMINE W - 51
1zxq_*_411zxq   *     NAGN-ACETYL-D-GLUCOSAMINE K - 52
1zxq_*_411zxq   *     NAGN-ACETYL-D-GLUCOSAMINE H - 53
1zxq_*_411zxq   *     NAGN-ACETYL-D-GLUCOSAMINE N - 58

Clusters included in this Subclass
CLUSTER: HA.2.34
CLUSTER: HA.3.44