ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.9.1

Subclass Accession number: 4800
Subclass: 4.9.1

PSSM

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 4

Average sequence ID (%) : 8.7 +/- 10.4
Average RMSD (Å) : 0.625 +/- 0.126

Consensus geometry

d (Å): 13

delta (°): 45-90

theta (°): 90-135

rho (°): 315-360

Consensus Sequence:	phpXhcpX
(φψ)-conformation:	aaplppaa

Pattern:	x	x	x	[AFL]	[ESW]	[AKRT]	x	x	[EK]	[EGN]	[AKL]	[DGNT]	x	[AEGQ]	[DGV]	[AFKL]	[KNQR]	[AKLT]	x	x	x
Conservation:	-0.736	0.159	0.141	0.378	0.297	0.159	-0.399	-1.116	3.355	1.038	-0.159	0.318	-0.717	-0.080	-0.119	-0.956	1.274	-0.558	-1.036	-0.444	-0.797

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1hbk_A_51	1hbk	A	56	76	KYEAWKSVENLNREDAQKRYV	HHHHHHHTTT--HHHHHHHHH	aaaaaaaapvxxaaaaaaaaa
1i6l_A_253	1i6l	A	253	273	IEELERQYEGKGYGVFKADLA	HHHHHHHTTT--HHHHHHHHH	aaaaaaaapvxxaaaaaaaaa
1ihu_A_387	1ihu	A	396	416	QHVLETKGKELDEAGKRLLEE	HHHHHHHHTT--HHHHHHHHH	aaaaaaaapvxxaaaaaaaaa
1m9f_C_36	1m9f	C	37	57	IPMFSALSEGATPQDLNTMLN	HHHHHHH-TT--HHHHHHHHH	aaaaaaaapvxxaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1hbk_A_51	1hbk	A	COACOENZYME A	I - 52
1hbk_A_51	1hbk	A	MYRMYRISTIC ACID	I - 52
1hbk_A_51	1hbk	A	COACOENZYME A	D - 53
1hbk_A_51	1hbk	A	COACOENZYME A	K - 56
1hbk_A_51	1hbk	A	MYRMYRISTIC ACID	K - 56
1hbk_A_51	1hbk	A	COACOENZYME A	W - 60
1hbk_A_51	1hbk	A	COACOENZYME A	Y - 75
1hbk_A_51	1hbk	A	MYRMYRISTIC ACID	Y - 75
1i6l_A_253	1i6l	A	MSESELENOMETHIONINE	R - 286
1i6l_A_253	1i6l	A	MSESELENOMETHIONINE	Y - 287
1i6l_A_253	1i6l	A	GOLGLYCEROL	Y - 287
1i6l_A_253	1i6l	A	MSESELENOMETHIONINE	H - 288
1i6l_A_253	1i6l	A	MSESELENOMETHIONINE	H - 289
1ihu_A_387	1ihu	A	CDCADMIUM ION	P - 387
1ihu_A_387	1ihu	A	CDCADMIUM ION	H - 388
1ihu_A_387	1ihu	A	CDCADMIUM ION	E - 389
1ihu_A_387	1ihu	A	CDCADMIUM ION	H - 397
1ihu_A_387	1ihu	A	CDCADMIUM ION	T - 401
1ihu_A_387	1ihu	A	CDCADMIUM ION	E - 416
1ihu_A_387	1ihu	A	CDCADMIUM ION	D - 417

Clusters included in this Subclass

CLUSTER: HH.4.337

CLUSTER: HH.5.340