ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.13.1

Subclass Accession number: 4815
Subclass: 4.13.1

PSSM

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 10

Average sequence ID (%) : 25.2 +/- 22.9
Average RMSD (Å) : 0.960 +/- 0.288

Consensus geometry

d (Å): 15

delta (°): 90-135

theta (°): 90-135

rho (°): 135-180

Consensus Sequence:	XpGXpXpX
(φψ)-conformation:	aalbppaa

Pattern:	[AFV]	[almt]	[egnq]	[lpw]	x	x	[eknqrs]	[g]	[aderst]	[FLTY]	[DNP]	[ekqrtw]	x	[almv]	x
Conservation:	0.145	-0.371	0.128	-0.583	-0.709	-0.828	-0.305	2.383	-0.975	1.159	1.681	-0.612	-0.950	0.158	-0.321

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1buc_A_28	1buc	A	28	42	VTERDHKGIYDKELI	HHHHHHHT---HHHH	aaaaaaavxbxaaaa
1cbg_*_280	1cbg	-	282	296	FMHPLTKGRYPESMR	HHHHHHHSS--HHHH	aaaaaaavbxwaaaa
1e4i_A_248	1e4i	A	250	264	FLQPIYQGSYPQFLV	HHHHHHHSS--HHHH	aaaaaaavbxpaxga
1e4m_M_284	1e4m	M	286	300	FMGPLTNGTYPQIMI	HHHHHHHSS--HHHH	aaaaaaavbxwaaaa
1gnx_A_261	1gnx	A	263	277	FTGPMLQGAYPEDLV	HHHHHHHSS--HHHH	aaaaaaavbxpaaaa
1gpi_A_324	1gpi	A	328	342	AQQKTAFGDTNWFAQ	HHHHHHHT---HHHH	aaaaaaavbxxaaaa
1h49_A_287	1h49	A	289	303	FLEPVVRGDYPFSMR	HHHHHHHSS--HHHH	aaaaaaavbxwaaaa
1jqi_A_33	1jqi	A	33	47	AAQLDKEHLFPTSQV	HHHHHHHT---HHHH	aaaaaaalxxxaaaa
1oim_A_249	1oim	A	251	265	FLNPIYRGDYPELVL	HHHHHHHSS--HHHH	aaaaaaavbxxaaaa
1r2j_A_16	1r2j	A	16	30	AAEWDTSGELPRDLL	HHHHHHHT---HHHH	aaaaaaavbbxaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1e4m_M_284	1e4m	M	NAGN-ACETYL-D-GLUCOSAMINE	G - 288
1e4m_M_284	1e4m	M	NAGN-ACETYL-D-GLUCOSAMINE	N - 292
1e4m_M_284	1e4m	M	FUCFUCOSE	N - 292
1e4m_M_284	1e4m	M	NAGN-ACETYL-D-GLUCOSAMINE	G - 293
1e4m_M_284	1e4m	M	NAGN-ACETYL-D-GLUCOSAMINE	T - 294
1e4m_M_284	1e4m	M	FUCFUCOSE	T - 294
1e4m_M_284	1e4m	M	NAGN-ACETYL-D-GLUCOSAMINE	Y - 295
1e4m_M_284	1e4m	M	FUCFUCOSE	Y - 295
1e4m_M_284	1e4m	M	NAGN-ACETYL-D-GLUCOSAMINE	P - 296
1e4m_M_284	1e4m	M	FUCFUCOSE	P - 296
1e4m_M_284	1e4m	M	NAGN-ACETYL-D-GLUCOSAMINE	Q - 297
1e4m_M_284	1e4m	M	FUCFUCOSE	Q - 297
1e4m_M_284	1e4m	M	MANALPHA-D-MANNOSE	Q - 297
1e4m_M_284	1e4m	M	NAGN-ACETYL-D-GLUCOSAMINE	I - 300
1e4m_M_284	1e4m	M	MANALPHA-D-MANNOSE	I - 300
1e4m_M_284	1e4m	M	MANALPHA-D-MANNOSE	D - 301

Clusters included in this Subclass

CLUSTER: HH.3.76