ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 5.4.3

Subclass Accession number: 4886
Subclass: 5.4.3

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 3

Average sequence ID (%) : 10.0 +/- 10.0
Average RMSD (Å) : 1.300 +/- 0.346

Consensus geometry

d (Å): 15

delta (°): 90-135

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	XXcXXhXXE
(φψ)-conformation:	aalppppaa

Pattern:	[ADR]	[FMR]	[AG]	[ADK]	[CMY]	[LMY]	[KSY]	[EPS]	x	[IMT]	[EF]	[AKQ]	[GK]	[AQ]	x	[ALV]	[NPS]	x	[E]	[ENT]	x	x	x	[LM]	x	x	[AD]	[AVY]	x	x
Conservation:	-0.673	-0.359	1.099	-0.463	0.165	0.479	-0.359	0.060	-0.254	0.060	0.243	0.060	0.968	0.871	-0.987	0.060	0.165	-0.987	3.514	0.269	-0.777	-0.673	-1.091	2.138	-0.673	-1.301	0.254	-0.254	-0.568	-0.987

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1jlv_A_104	1jlv	A	107	136	RFADYYYPQIFAKQPANAENEKKMKDAVDF	HHHHHHHHHHTT-----HHHHHHHHHHHHH	aaaaaaaaaaaalxwxbaaaaaaaaaaaaa
1qjb_A_19	1qjb	A	21	50	DMAACMKSVTEQGAELSNEERNLLSVAYKN	HHHHHHHHHHHT-----HHHHHHHHHHHHH	aaaaaaaaaaaavxpxxaaaaaaaaaaaaa
3adk_*_52	3adk	-	52	81	ARGKMLSEIMEKGQLVPLETVLDMLRDAMV	HHHHHHHHHHTTT----HHHHHHHHHHHHH	aaaaaaaaaaaavxxxxaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Clusters included in this Subclass