Information on SUBCLASS 2.2.21 |
Subclass Accession number: 491
Subclass: 2.2.21 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 6 Average sequence ID (%) : 8.6 +/- 12.1 Average RMSD (Å) : 0.650 +/- 0.138 Consensus geometry
|
Consensus Sequence: | hhpppX |
(φψ)-conformation: | bbaabb |
Pattern: | x | [deht] | [filv] | [acgs] | [DENST] | [DKRS] | [hsy] | [ilty] | [agv] | x | [ADKQS] | [FILV] | x | x |
Conservation: | -0.094 | -0.032 | 0.070 | -0.687 | 1.191 | 0.916 | 1.000 | -0.504 | -0.471 | -1.678 | 0.378 | 1.824 | -1.533 | -0.381 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ju2_A_318 | 1ju2 | A | 319 | 332 | LGISNDFYQCSFSS | EEE-SSEEEEEEEE | bbxbaabbbbbbbb |
1mpg_A_28 | 1mpg | A | 28 | 41 | ETVADSYYARSLAV | EEE-SS-EEEEEEE | bbbbaabbbbxbbb |
1nu0_A_8 | 1nu0 | A | 8 | 21 | FDFGTKSIGVAVGQ | EE--SSEEEEEEEE | bbxbaabbxbbbbb |
1p15_A_658 | 1p15 | A | 658 | 670 | .EECESYTVRDLLV | .EE-SSEEEEEEEE | .bxxaabbxbxbbx |
1qy1_A_41 | 1qy1 | A | 45 | 58 | IHVLEKSLVLKFHT | EEE-SSEEEEEEEE | bbxbaabbxbbbbb |
1vh5_A_97 | 1vh5 | A | 105 | 118 | LHLGSRHQVWQIEI | EEE-SSEEEEEEEE | abbxaabbbbbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ju2_A_318 | 1ju2 | A | NAGN-ACETYL-D-GLUCOSAMINE | I - 321 |
1ju2_A_318 | 1ju2 | A | NAGN-ACETYL-D-GLUCOSAMINE | S - 322 |
1ju2_A_318 | 1ju2 | A | NAGN-ACETYL-D-GLUCOSAMINE | N - 323 |
1ju2_A_318 | 1ju2 | A | NAGN-ACETYL-D-GLUCOSAMINE | D - 324 |
1ju2_A_318 | 1ju2 | A | NAGN-ACETYL-D-GLUCOSAMINE | Y - 326 |
1nu0_A_8 | 1nu0 | A | MSESELENOMETHIONINE | F - 8 |
1nu0_A_8 | 1nu0 | A | MSESELENOMETHIONINE | V - 17 |
1nu0_A_8 | 1nu0 | A | MSESELENOMETHIONINE | A - 18 |
1nu0_A_8 | 1nu0 | A | MSESELENOMETHIONINE | V - 19 |
1nu0_A_8 | 1nu0 | A | MSESELENOMETHIONINE | G - 20 |
1nu0_A_8 | 1nu0 | A | MSESELENOMETHIONINE | Q - 21 |
1qy1_A_41 | 1qy1 | A | PRZ2-ISOBUTYL-3-METHOXYPYRAZINE | L - 42 |
1qy1_A_41 | 1qy1 | A | PRZ2-ISOBUTYL-3-METHOXYPYRAZINE | L - 54 |
1qy1_A_41 | 1qy1 | A | PRZ2-ISOBUTYL-3-METHOXYPYRAZINE | F - 56 |
Clusters included in this Subclass |
CLUSTER: HA.2.117 |
CLUSTER: HA.3.158 |
CLUSTER: HA.4.132 |
CLUSTER: HA.4.180 |