Information on SUBCLASS 5.38.1 |
Subclass Accession number: 4930
Subclass: 5.38.1 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 14.6 +/- 15.5 Average RMSD (Å) : 1.033 +/- 0.451 Consensus geometry
|
Consensus Sequence: | pXXhXhXhX |
(φψ)-conformation: | aalpabpaa |
Pattern: | x | x | [KS] | [DRS] | [AN] | [EG] | [IL] | [GPQ] | [FV] | [NPS] | [AV] | [FGT] | [EQR] | [ILV] | [HS] | [EGR] |
Conservation: | -0.977 | -0.977 | 0.584 | -0.855 | -0.313 | 0.445 | 1.441 | -0.977 | 0.807 | -0.369 | 0.477 | -1.585 | 0.603 | 0.968 | 1.706 | -0.977 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1izm_A_10 | 1izm | A | 11 | 26 | QLKSAGIGFNATELHG | HHHHTT-S--HHHHHH | aaaaavxabxaaaaaa |
1kx5_C_17 | 1kx5 | C | 17 | 32 | RSSRAGLQFPVGRVHR | HHHHHT-SS-HHHHHH | aaaaavbaxxaaaaaa |
1skn_P_460 | 1skn | P | 464 | 479 | LASDNELPVSAFQISE | HHHHTT-SS-HHHHHH | aaaaalxabxaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1izm_A_10 | 1izm | A | MSESELENOMETHIONINE | Q - 10 |
1izm_A_10 | 1izm | A | MSESELENOMETHIONINE | Q - 11 |
1izm_A_10 | 1izm | A | MSESELENOMETHIONINE | L - 12 |
1izm_A_10 | 1izm | A | MSESELENOMETHIONINE | K - 13 |
1izm_A_10 | 1izm | A | MSESELENOMETHIONINE | N - 20 |
1izm_A_10 | 1izm | A | MSESELENOMETHIONINE | A - 21 |
1izm_A_10 | 1izm | A | MSESELENOMETHIONINE | L - 24 |
1izm_A_10 | 1izm | A | MSESELENOMETHIONINE | C - 33 |
1skn_P_460 | 1skn | P | LDALAURYL DIMETHYLAMINE-N-OXIDE | P - 471 |
1skn_P_460 | 1skn | P | LDALAURYL DIMETHYLAMINE-N-OXIDE | V - 472 |
1skn_P_460 | 1skn | P | LDALAURYL DIMETHYLAMINE-N-OXIDE | Q - 476 |
1skn_P_460 | 1skn | P | LDALAURYL DIMETHYLAMINE-N-OXIDE | I - 477 |
1skn_P_460 | 1skn | P | LDALAURYL DIMETHYLAMINE-N-OXIDE | E - 479 |
Clusters included in this Subclass |
CLUSTER: HH.5.220 |