Information on SUBCLASS 6.6.1 |
Subclass Accession number: 4946
Subclass: 6.6.1 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 11 Average sequence ID (%) : 48.9 +/- 25.6 Average RMSD (Å) : 0.418 +/- 0.172 Consensus geometry
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Consensus Sequence: | AhKGhGTcEp |
(φψ)-conformation: | aapepebpaa |
Pattern: | [afvy] | x | [AC] | [EHKY] | [aekqrt] | [IL] | [HKQRY] | [HKQRY] | [AS] | [FILM] | [KRS] | [G] | [AILMW] | [G] | [T] | [DNR] | [DEH] | [dehk] | [almtv] | [IL] | [ilt] | [DEHKNRS] | [ILV] | [ILM] |
Conservation: | -1.057 | -0.986 | 0.380 | -0.323 | -1.133 | 0.644 | -0.531 | -0.514 | 0.458 | -0.078 | 0.248 | 2.220 | -1.039 | 2.220 | 1.632 | 0.012 | 0.375 | -1.257 | -0.913 | 0.477 | -0.870 | -0.794 | 0.516 | 0.314 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ala_*_17 | 1ala | - | 19 | 42 | ADAEALRKAMKGMGTDEETILKIL | HHHHHHHHHHSSSS--HHHHHHHH | aaaaaaaaaaxexebxaaaaaaaa |
1ala_*_91 | 1ala | - | 91 | 114 | FDAHALKHAIKGAGTNEKVLTEIL | HHHHHHHHHHSSSS--HHHHHHHH | aaaaaaaaaaxexebbaaaaaaaa |
1axn_*_21 | 1axn | - | 23 | 46 | VDAEAIQKAIRGIGTDEKMLISIL | HHHHHHHHHHSSSS--HHHHHHHH | aaaaaaaaaapexebxaaaaaaaa |
1axn_*_235 | 1axn | - | 254 | 277 | FLAERLHRALKGIGTDEFTLNRIM | HHHHHHHHHHSSSS--HHHHHHHH | aaaaaaaaaaxebMxxaaaaaaaa |
1axn_*_92 | 1axn | - | 95 | 118 | FDAKQLKKSMKGAGTNEDALIEIL | HHHHHHHHHH-SSS--HHHHHHHH | aaaaaaaaaaxexebxaaaaaaaa |
1dm5_A_15 | 1dm5 | A | 17 | 40 | EDAETLRKAMKGIGTDEKSITHIL | HHHHHHHHHHSSSS--HHHHHHHH | aaaaaaaaaaxexebxaaaaaaaa |
1g5n_A_15 | 1g5n | A | 17 | 40 | ADAEVLRKAMKGLGTDEDSILNLL | HHHHHHHHHHSSSS--HHHHHHHH | aaaaaaaaaapexebxaaaaaaaa |
1hm6_A_274 | 1hm6 | A | 277 | 300 | FFAEKLHQAMKGIGTRHKTLIRIM | HHHHHHHHHHSSSS--HHHHHHHH | aaaaaaaaaabexebxaaaaaaaa |
1hvd_*_247 | 1hvd | - | 250 | 273 | YLAETLYYAMKGAGTDDHTLIRVM | HHHHHHHHHHSSSS--HHHHHHHH | aaaaaaaaaapexebxaaaaaaaa |
1hvd_*_88 | 1hvd | - | 91 | 114 | YDAYELKHALKGAGTNEKVLTEII | HHHHHHHHHHSSSS--HHHHHHHH | aaaaaaaaaapexebxaaaaaaaa |
1n00_A_18 | 1n00 | A | 20 | 43 | EDCEQLRKAFSGWGTNEGLIIDIL | HHHHHHHHHTSSSS--HHHHHHHH | aaaaaaaaaaxebebbaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Clusters included in this Subclass |
CLUSTER: HH.6.22 |