ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 6.30.1

Subclass Accession number: 4973
Subclass: 6.30.1

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
GO : GO:0005489 (>75 %)
SCOP : 46625 (>75 %) 46626 (>75 %) 46627 (>75 %)

Number of loops: 4

Average sequence ID (%) : 65.2 +/- 10.7
Average RMSD (Å) : 0.200 +/- 0.000

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 45-90

rho (°): 0-45

Consensus Sequence:	phLpGGhphE
(φψ)-conformation:	aappgepbaa

Pattern:	[K]	[AD]	[A]	[ILM]	[E]	[KQ]	[FY]	[L]	[DEQ]	[G]	[G]	[FL]	[KNT]	[ILV]	[E]	[AS]	[I]	[IKTV]	[Y]	[Q]	[IV]	[EN]	[N]
Conservation:	0.706	-1.443	0.103	-0.785	0.706	-0.453	0.588	0.103	-0.684	1.310	1.310	-0.623	-1.325	-0.733	0.706	-0.756	0.103	-1.935	1.913	0.706	-0.180	-0.646	1.310

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1c6r_A_34	1c6r	A	34	56	KAAMEQFLQGGFNLEAITYQVEN	HHHHHHHSTT-SSHHHHHHHHHH	aaaaaaaxxgexbaaaaaaaaaa
1ctj_*_34	1ctj	-	34	56	KAAIEQFLDGGFNIEAIVYQIEN	HHHHHHHSTT-SSHHHHHHHHHH	aaaaaaaxpgexbaaaaaaaaaa
1cyj_*_33	1cyj	-	33	55	KAALEQYLDGGFKVESIIYQVEN	HHHHHHHSTT-SSHHHHHHHHHH	aaaaaaaxxvexbaaaaaaaaaa
1ls9_A_36	1ls9	A	36	58	KDAIEKYLEGGLTLEAIKYQVNN	HHHHHHHSTT-S-HHHHHHHHHH	aaaaaaaxxvexbaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1c6r_A_34	1c6r	A	HEMPROTOPORPHYRIN IX CONTAINING FE	A - 36
1c6r_A_34	1c6r	A	HEMPROTOPORPHYRIN IX CONTAINING FE	M - 37
1c6r_A_34	1c6r	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Q - 39
1c6r_A_34	1c6r	A	CDCADMIUM ION	F - 40
1c6r_A_34	1c6r	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 40
1c6r_A_34	1c6r	A	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 41
1c6r_A_34	1c6r	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Q - 42
1c6r_A_34	1c6r	A	HEMPROTOPORPHYRIN IX CONTAINING FE	I - 50
1c6r_A_34	1c6r	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Q - 53
1c6r_A_34	1c6r	A	HEMPROTOPORPHYRIN IX CONTAINING FE	V - 54
1ctj_*_34	1ctj	*	HEMPROTOPORPHYRIN IX CONTAINING FE	I - 37
1ctj_*_34	1ctj	*	HEMPROTOPORPHYRIN IX CONTAINING FE	D - 42
1ctj_*_34	1ctj	*	HEMPROTOPORPHYRIN IX CONTAINING FE	I - 54
1cyj_*_33	1cyj	*	HEMPROTOPORPHYRIN IX CONTAINING FE	A - 35
1cyj_*_33	1cyj	*	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 36
1cyj_*_33	1cyj	*	HEMPROTOPORPHYRIN IX CONTAINING FE	Q - 38
1cyj_*_33	1cyj	*	HEMPROTOPORPHYRIN IX CONTAINING FE	Y - 39
1cyj_*_33	1cyj	*	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 40
1cyj_*_33	1cyj	*	HEMPROTOPORPHYRIN IX CONTAINING FE	D - 41
1cyj_*_33	1cyj	*	CDCADMIUM ION	E - 47
1cyj_*_33	1cyj	*	HEMPROTOPORPHYRIN IX CONTAINING FE	S - 48
1cyj_*_33	1cyj	*	HEMPROTOPORPHYRIN IX CONTAINING FE	I - 49
1cyj_*_33	1cyj	*	CDCADMIUM ION	I - 50
1cyj_*_33	1cyj	*	HEMPROTOPORPHYRIN IX CONTAINING FE	Q - 52
1cyj_*_33	1cyj	*	HEMPROTOPORPHYRIN IX CONTAINING FE	V - 53
1cyj_*_33	1cyj	*	CDCADMIUM ION	E - 54
1ls9_A_36	1ls9	A	HEMPROTOPORPHYRIN IX CONTAINING FE	A - 38
1ls9_A_36	1ls9	A	HEMPROTOPORPHYRIN IX CONTAINING FE	I - 39
1ls9_A_36	1ls9	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Y - 42
1ls9_A_36	1ls9	A	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 43
1ls9_A_36	1ls9	A	HEMPROTOPORPHYRIN IX CONTAINING FE	A - 51
1ls9_A_36	1ls9	A	HEMPROTOPORPHYRIN IX CONTAINING FE	I - 52
1ls9_A_36	1ls9	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Q - 55
1ls9_A_36	1ls9	A	HEMPROTOPORPHYRIN IX CONTAINING FE	V - 56

Clusters included in this Subclass

CLUSTER: HH.5.175