ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 9.1.1

Subclass Accession number: 5063
Subclass: 9.1.1

PSSM

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 11

Average sequence ID (%) : 27.0 +/- 25.2
Average RMSD (Å) : 0.345 +/- 0.093

Consensus geometry

d (Å): 13

delta (°): 45-90

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	hhpXpXpXRhphX
(φψ)-conformation:	aapapaaapppaa

Pattern:	[DEPS]	[AEKT]	[AILMPV]	[hily]	[ADEQ]	[FLTV]	[CLMV]	x	[ADKNQR]	[CFIL]	[LW]	[ehqr]	x	[DENQT]	[hpr]	[ANQST]	[adekqrst]	[R]	[ILPY]	[KST]	[AFIP]	x	[DEQ]	[AIL]
Conservation:	0.152	-0.207	-0.345	-0.486	0.107	0.205	0.593	-1.225	-0.388	0.469	1.335	-0.591	-1.437	0.377	-0.002	-0.172	-0.971	3.100	-0.631	0.685	-0.683	-1.426	1.412	0.131

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1byg_A_413	1byg	A	413	436	PAVYEVMKNCWHLDAAMRPSFLQL	HHHHHHHHHHT-SSGGGS--HHHH	aaaaaaaaaaaxaxaaaxxxaaaa
1jpa_A_861	1jpa	A	861	884	SALHQLMLDCWQKDRNHRPKFGQI	HHHHHHHHHHT-SSTTTS--HHHH	aaaaaaaaaaaxaxaaaxxxaaaa
1k9a_A_413	1k9a	A	413	436	PAVYDVMKNCWHLDAATRPTFLQL	HHHHHHHHHHT-SSGGGS--HHHH	aaaaaaaaaaaxaxaaaxxxaaaa
1m2r_A_295	1m2r	A	295	318	PEAIDFLDKLLRYDHQERLTALEA	HHHHHHHHTT--SSTTTS--HHHH	aaaaaaaaaaxbaxaaaxxxaaaa
1mqb_A_844	1mqb	A	844	867	SAIYQLMMQCWQQERARRPKFADI	HHHHHHHHHHT-SSTTTS--HHHH	aaaaaaaaaaaxaxaaapxxaaaa
1na7_A_295	1na7	A	295	318	PEALDFLDKLLRYDHQSRLTAREA	HHHHHHHHHHS-SSTTSS--HHHH	aaaaaaaaaaxbaxaaaxpxaaaa
1nvr_A_236	1nvr	A	236	259	SAPLALLHKILVENPSARITIPDI	HHHHHHHHHHS-SSTTTS--HHHH	aaaaaaaaaaxbaxaaaxxbaaaa
1opj_A_485	1opj	A	485	508	EKVYELMRACWQWNPSDRPSFAEI	HHHHHHHHHHT-SSGGGS--HHHH	aaaaaaaaaaaxaxaaaxxxaaaa
1phk_*_258	1phk	-	258	281	DTVKDLVSRFLVVQPQKRYTAEEA	HHHHHHHHHH--SSGGGS--HHHH	aaaaaaaaaaxbaxaaaxxbaaaa
1q41_A_311	1q41	A	311	334	PEAIALCSRLLEYTPTARLTPLEA	HHHHHHHHHHS-SSGGGS--HHHH	aaaaaaaaaaxbaxaaaxxxaaaa
1vr2_A_1133	1vr2	A	1133	1156	PEMYQTMLDCWHGEPSQRPTFSEL	HHHHHHHHHHT-SSGGGS--HHHH	aaaaaaaaaaaxaxaaaxxxaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1opj_A_485	1opj	A	MYRMYRISTIC ACID	V - 487
1opj_A_485	1opj	A	MYRMYRISTIC ACID	F - 512

Clusters included in this Subclass

CLUSTER: HH.11.16

CLUSTER: HH.9.5