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PDB code:

Information on SUBCLASS 13.2.1

Subclass Accession number: 5148 Subclass: 13.2.1 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0005489 (>75 %)   SCOP : 46625 (>75 %)  46626 (>75 %)  46627 (>75 %)

Number of loops: 9 Average sequence ID (%) : 60.8 +/- 23.6 Average RMSD (Å) : 0.311 +/- 0.145 Consensus geometry d (Å): 19 delta (°): 90-135 theta (°): 90-135 rho (°): 180-225

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ccr_*_79	1ccr	-	79	106	PKKYIPGTKMVFPGLKKPQERADLISYL	HHHHSTT----------HHHHHHHHHHH	aaaabpvxaxxbaebaxaaaaaaaaaaa
1co6_A_70	1co6	A	70	97	PKAKIPGTKMIFAGVKDEQKVSDLIAYI	HHHHSTT-S--------HHHHHHHHHHH	aaaabpvxaxxbaebapaaaaaaaaaaa
1hro_A_75	1hro	A	75	102	PQKIVPGTKMGYPGQPDPQKRADIIAYL	HHHHSTT----------HHHHHHHHHHH	aaaabpvxaxapaebaxaaaaaaaaaaa
1ql3_A_69	1ql3	A	69	96	PKAVVKGTKMAFAGLPKIEDRANLIAYL	HHHHSTT-S--------HHHHHHHHHHH	aaaabxvpaxxbaebaxaaaaaaaaaaa
1qn2_A_69	1qn2	A	69	96	PKKKVPGTKMVFPGISDPKKVDDIIAYL	HHHHSTT-S--------HHHHHHHHHHH	aaaabpvxaxxbaebabaaaaaaaaaaa
1wej_F_71	1wej	F	71	98	PKKYIPGTKMIFAGIKKKTEREDLIAYL	HHHHSTT----------HHHHHHHHHHH	aaaabpvpaxxbaebaxaaaaaaaaaaa
1ycc_*_71	1ycc	-	71	98	PKKYIPGTKMAFGGLKKEKDRNDLITYL	HHHHSTT----------HHHHHHHHHHH	aaaabxvxaxxbaebaxaaaaaaaaaaa
1ytc_*_71	1ytc	-	71	98	PKKYIPGTKMAFAGLKKEKDRNDLITYM	HHHHSTT----------HHHHHHHHHHH	aaaabpgxaxxbaebaxaaaaaaaaaaa
5cyt_R_71	5cyt	R	71	98	PKKYIPGTKMIFAGIKKKGERQDLVAYL	HHHHSTT-S--------HHHHHHHHHHH	aaaabpvxaxxbaebaxaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ccr_*_79	1ccr	*	TMLMETHYL PART OF N-TRIMETHYLLYSINE	K - 80
1ccr_*_79	1ccr	*	TMLMETHYL PART OF N-TRIMETHYLLYSINE	K - 81
1ccr_*_79	1ccr	*	HEMPROTOPORPHYRIN IX CONTAINING FE	T - 86
1ccr_*_79	1ccr	*	HEMPROTOPORPHYRIN IX CONTAINING FE	K - 87
1ccr_*_79	1ccr	*	HEMPROTOPORPHYRIN IX CONTAINING FE	M - 88
1ccr_*_79	1ccr	*	TMLMETHYL PART OF N-TRIMETHYLLYSINE	M - 88
1ccr_*_79	1ccr	*	HEMPROTOPORPHYRIN IX CONTAINING FE	V - 89
1ccr_*_79	1ccr	*	TMLMETHYL PART OF N-TRIMETHYLLYSINE	V - 89
1ccr_*_79	1ccr	*	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 90
1ccr_*_79	1ccr	*	TMLMETHYL PART OF N-TRIMETHYLLYSINE	F - 90
1ccr_*_79	1ccr	*	TMLMETHYL PART OF N-TRIMETHYLLYSINE	P - 91
1ccr_*_79	1ccr	*	TMLMETHYL PART OF N-TRIMETHYLLYSINE	G - 92
1ccr_*_79	1ccr	*	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 93
1ccr_*_79	1ccr	*	TMLMETHYL PART OF N-TRIMETHYLLYSINE	K - 94
1ccr_*_79	1ccr	*	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 102
1ccr_*_79	1ccr	*	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 106
1co6_A_70	1co6	A	HEMPROTOPORPHYRIN IX CONTAINING FE	I - 74
1co6_A_70	1co6	A	HEMPROTOPORPHYRIN IX CONTAINING FE	G - 76
1co6_A_70	1co6	A	HEMPROTOPORPHYRIN IX CONTAINING FE	T - 77
1co6_A_70	1co6	A	HEMPROTOPORPHYRIN IX CONTAINING FE	K - 78
1co6_A_70	1co6	A	HEMPROTOPORPHYRIN IX CONTAINING FE	M - 79
1co6_A_70	1co6	A	HEMPROTOPORPHYRIN IX CONTAINING FE	I - 80
1co6_A_70	1co6	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 81
1co6_A_70	1co6	A	HEMPROTOPORPHYRIN IX CONTAINING FE	V - 84
1co6_A_70	1co6	A	HEMPROTOPORPHYRIN IX CONTAINING FE	I - 97
1hro_A_75	1hro	A	HEMPROTOPORPHYRIN IX CONTAINING FE	V - 79
1hro_A_75	1hro	A	HEMPROTOPORPHYRIN IX CONTAINING FE	G - 81
1hro_A_75	1hro	A	HEMPROTOPORPHYRIN IX CONTAINING FE	T - 82
1hro_A_75	1hro	A	HEMPROTOPORPHYRIN IX CONTAINING FE	K - 83
1hro_A_75	1hro	A	HEMPROTOPORPHYRIN IX CONTAINING FE	M - 84
1hro_A_75	1hro	A	HEMPROTOPORPHYRIN IX CONTAINING FE	G - 85
1hro_A_75	1hro	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Y - 86
1hro_A_75	1hro	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Q - 89
1hro_A_75	1hro	A	HEMPROTOPORPHYRIN IX CONTAINING FE	I - 98
1ql3_A_69	1ql3	A	HECHEME C	V - 73
1ql3_A_69	1ql3	A	HECHEME C	G - 75
1ql3_A_69	1ql3	A	HECHEME C	T - 76
1ql3_A_69	1ql3	A	HECHEME C	K - 77
1ql3_A_69	1ql3	A	HECHEME C	M - 78
1ql3_A_69	1ql3	A	HECHEME C	A - 79
1ql3_A_69	1ql3	A	HECHEME C	F - 80
1ql3_A_69	1ql3	A	HECHEME C	L - 83
1ql3_A_69	1ql3	A	HECHEME C	L - 92
1ql3_A_69	1ql3	A	HECHEME C	L - 96
1qn2_A_69	1qn2	A	HECHEME C	V - 79
1qn2_A_69	1qn2	A	HECHEME C	I - 83
1qn2_A_69	1qn2	A	HECHEME C	I - 92
1wej_F_71	1wej	F	HEMPROTOPORPHYRIN IX CONTAINING FE	I - 75
1wej_F_71	1wej	F	HEMPROTOPORPHYRIN IX CONTAINING FE	G - 77
1wej_F_71	1wej	F	HEMPROTOPORPHYRIN IX CONTAINING FE	T - 78
1wej_F_71	1wej	F	HEMPROTOPORPHYRIN IX CONTAINING FE	K - 79
1wej_F_71	1wej	F	HEMPROTOPORPHYRIN IX CONTAINING FE	M - 80
1wej_F_71	1wej	F	HEMPROTOPORPHYRIN IX CONTAINING FE	I - 81
1wej_F_71	1wej	F	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 82
1wej_F_71	1wej	F	HEMPROTOPORPHYRIN IX CONTAINING FE	I - 85
1wej_F_71	1wej	F	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 94
1wej_F_71	1wej	F	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 98
1ycc_*_71	1ycc	*	TMLMETHYL PART OF N-TRIMETHYLLYSINE	K - 72
1ycc_*_71	1ycc	*	TMLMETHYL PART OF N-TRIMETHYLLYSINE	G - 77
1ycc_*_71	1ycc	*	TMLMETHYL PART OF N-TRIMETHYLLYSINE	T - 78
1ycc_*_71	1ycc	*	TMLMETHYL PART OF N-TRIMETHYLLYSINE	K - 79
1ycc_*_71	1ycc	*	TMLMETHYL PART OF N-TRIMETHYLLYSINE	M - 80
1ycc_*_71	1ycc	*	HEMPROTOPORPHYRIN IX CONTAINING FE	A - 81
1ycc_*_71	1ycc	*	TMLMETHYL PART OF N-TRIMETHYLLYSINE	A - 81
1ycc_*_71	1ycc	*	TMLMETHYL PART OF N-TRIMETHYLLYSINE	F - 82
1ycc_*_71	1ycc	*	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 85
1ytc_*_71	1ytc	*	HEMPROTOPORPHYRIN IX CONTAINING FE	M - 98

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1ql3_A_69	1ql3	A	AHLHEME LIGAND CHAIN A	M - 78

Clusters included in this Subclass

CLUSTER: HH.12.3

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