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Information on SUBCLASS 13.3.1
Subclass Accession number: 5149
Subclass: 13.3.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005489 (>75 %)  
SCOP : 46625 (>75 %)  46626 (>75 %)  46627 (>75 %)  
 Number of loops: 4

Average sequence ID (%) : 59.8 +/- 14.6
Average RMSD (Å) : 0.325 +/- 0.050

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: pNGKcAMPAhhcRLXpp
(φψ)-conformation: aaebeapppaaaabpaa
Pattern: [ILV][DE][AS][I][IKT][Y][Q][V][ENQ][N][G][K][GN][A][M][P][A][FW][AGS][DG][RT][L][DSV][DE][DE][DE][I][AEQ][AD][AV][AS][AEN][Y][V][FLY][DKS][Q][AS]x
Conservation:-0.4900.132-0.5060.288-1.5971.9820.8530.288-0.6851.4171.4170.853-0.1960.2880.8531.9820.2881.122-0.966-0.555-0.7090.288-1.6450.1620.1300.1590.288-0.996-1.153-0.788-0.490-1.3081.9820.288-0.572-1.1150.853-0.519-1.619
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1c6r_A_471c6r   A4785LEAITYQVENGKGAMPAWSGTLDDDEIAAVAAYVYDQASHHHHHHHHHH-BTTB---TTTS-HHHHHHHHHHHHHHHHaaaaaaaaaaebeaxxxaaaNbxaaaaaaaaaaaaaaaa
1cyj_*_461cyj   -4684VESIIYQVENGKGAMPAWADRLSEEEIQAVAEYVFKQATHHHHHHHHHH-BTTB---TTTS-HHHHHHHHHHHHHHHHaaaaaaaaaaebeaxxxaaaabxaaaaaaaaaaaaaaaa
1gdv_A_441gdv   A4482IDAITYQVQNGKNAMPAFGGRLVDEDIEDAANYVLSQSEHHHHHHHHHH-BTTB---TTTS-HHHHHHHHHHHHHHHHaaaaaaaaaaebeaxxxaaaaxxaaaaaaaaaaaaaaaa
1ls9_A_491ls9   A4987LEAIKYQVNNGKGAMPAWADRLDEDDIEAVSNYVYDQAVHHHHHHHHHH-BTTB---TTTS-HHHHHHHHHHHHHHHHaaaaaaaaaaebeaxxxaaaabxaaaaaaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1c6r_A_471c6r   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 50
1c6r_A_471c6r   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 53
1c6r_A_471c6r   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 54
1c6r_A_471c6r   A     CDCADMIUM ION K - 58
1c6r_A_471c6r   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 58
1c6r_A_471c6r   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 59
1c6r_A_471c6r   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 60
1c6r_A_471c6r   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 61
1c6r_A_471c6r   A     HEMPROTOPORPHYRIN IX CONTAINING FE P - 62
1c6r_A_471c6r   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 64
1c6r_A_471c6r   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 68
1c6r_A_471c6r   A     CDCADMIUM ION D - 69
1c6r_A_471c6r   A     CDCADMIUM ION D - 70
1c6r_A_471c6r   A     CDCADMIUM ION D - 71
1c6r_A_471c6r   A     CDCADMIUM ION E - 72
1c6r_A_471c6r   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 76
1c6r_A_471c6r   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 77
1c6r_A_471c6r   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 80
1cyj_*_461cyj   *     CDCADMIUM ION E - 47
1cyj_*_461cyj   *     HEMPROTOPORPHYRIN IX CONTAINING FE S - 48
1cyj_*_461cyj   *     HEMPROTOPORPHYRIN IX CONTAINING FE I - 49
1cyj_*_461cyj   *     CDCADMIUM ION I - 50
1cyj_*_461cyj   *     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 52
1cyj_*_461cyj   *     HEMPROTOPORPHYRIN IX CONTAINING FE V - 53
1cyj_*_461cyj   *     CDCADMIUM ION E - 54
1cyj_*_461cyj   *     HEMPROTOPORPHYRIN IX CONTAINING FE K - 57
1cyj_*_461cyj   *     HEMPROTOPORPHYRIN IX CONTAINING FE G - 58
1cyj_*_461cyj   *     HEMPROTOPORPHYRIN IX CONTAINING FE A - 59
1cyj_*_461cyj   *     HEMPROTOPORPHYRIN IX CONTAINING FE M - 60
1cyj_*_461cyj   *     HEMPROTOPORPHYRIN IX CONTAINING FE P - 61
1cyj_*_461cyj   *     HEMPROTOPORPHYRIN IX CONTAINING FE W - 63
1cyj_*_461cyj   *     CDCADMIUM ION R - 66
1cyj_*_461cyj   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 67
1cyj_*_461cyj   *     CDCADMIUM ION L - 67
1cyj_*_461cyj   *     CDCADMIUM ION S - 68
1cyj_*_461cyj   *     CDCADMIUM ION E - 69
1cyj_*_461cyj   *     CDCADMIUM ION E - 71
1cyj_*_461cyj   *     CDCADMIUM ION I - 72
1cyj_*_461cyj   *     CDCADMIUM ION Q - 73
1cyj_*_461cyj   *     HEMPROTOPORPHYRIN IX CONTAINING FE V - 75
1cyj_*_461cyj   *     HEMPROTOPORPHYRIN IX CONTAINING FE A - 76
1cyj_*_461cyj   *     HEMPROTOPORPHYRIN IX CONTAINING FE V - 79
1gdv_A_441gdv   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 47
1gdv_A_441gdv   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 50
1gdv_A_441gdv   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 51
1gdv_A_441gdv   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 55
1gdv_A_441gdv   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 56
1gdv_A_441gdv   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 57
1gdv_A_441gdv   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 58
1gdv_A_441gdv   A     HEMPROTOPORPHYRIN IX CONTAINING FE P - 59
1gdv_A_441gdv   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 61
1gdv_A_441gdv   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 65
1gdv_A_441gdv   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 73
1gdv_A_441gdv   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 74
1gdv_A_441gdv   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 77
1ls9_A_491ls9   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 51
1ls9_A_491ls9   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 52
1ls9_A_491ls9   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 55
1ls9_A_491ls9   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 56
1ls9_A_491ls9   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 60
1ls9_A_491ls9   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 61
1ls9_A_491ls9   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 62
1ls9_A_491ls9   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 63
1ls9_A_491ls9   A     HEMPROTOPORPHYRIN IX CONTAINING FE P - 64
1ls9_A_491ls9   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 66
1ls9_A_491ls9   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 70
1ls9_A_491ls9   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 78
1ls9_A_491ls9   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 79
1ls9_A_491ls9   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 82

Clusters included in this Subclass
CLUSTER: HH.12.18