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Information on SUBCLASS 0.1.31
Subclass Accession number: 5218
Subclass: 0.1.31 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 16.0 +/- 15.4
Average RMSD (Å) : 0.600 +/- 0.100

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: ppXX
(φψ)-conformation: aabp
Pattern: [AGSV]xx[GLWY][AFV][aekl]x[l][AS][DEHNT]xx[KPQR][NV]x
Conservation:-0.029-1.216-1.048-0.5660.369-0.588-0.7971.2272.2740.332-0.881-0.5460.5890.881-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1chu_A_181chu   A2034GLSLALRLADQHQVIHHHHHHHHTTTS-EEaaaaaaaaaaabbbb
1ju2_A_381ju2   A3852GCPLAATLSEKYKVLHHHHHHHHTTTS-EEaaaaaaaaaaabxbb
1obd_A_531obd   A6174SEFWFKFLSNDVRN.HHHHHHHTTTT-EE.aaaaaaaaaaabxb.
1qe3_A_3641qe3   A367381AVAYASAQSHYAPVWHHHHHHHHTTTS-EEaaaaaaaaaaabwbb
1yaa_A_2381yaa   A240254VRLGVEKLSTVSPVFHHHHHHHTTTT--EEaaaaaaaaaaabxxx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ju2_A_381ju2   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 38
1ju2_A_381ju2   A     FADFLAVIN-ADENINE DINUCLEOTIDE L - 54
1obd_A_531obd   A     MGMAGNESIUM ION L - 57
1obd_A_531obd   A     MGMAGNESIUM ION T - 58
1obd_A_531obd   A     AMPADENOSINE MONOPHOSPHATE K - 59
1obd_A_531obd   A     MGMAGNESIUM ION S - 61
1obd_A_531obd   A     AMPADENOSINE MONOPHOSPHATE E - 62
1obd_A_531obd   A     MGMAGNESIUM ION F - 65
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1obd_A_531obd   A AC6MG BINDING SITE FOR CHAIN AS - 61
1obd_A_531obd   A AC7AMP BINDING SITE FOR CHAIN AE - 62
1obd_A_531obd   A AC4SO4 BINDING SITE FOR CHAIN AR - 73
1obd_A_531obd   A AC4SO4 BINDING SITE FOR CHAIN AN - 74

Clusters included in this Subclass
CLUSTER: HE.6.53