ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 0.1.40

Subclass Accession number: 5227
Subclass: 0.1.40

PSSM

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 5

Average sequence ID (%) : 23.2 +/- 22.7
Average RMSD (Å) : 0.700 +/- 0.000

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 90-135

rho (°): 315-360

Consensus Sequence:	XhLc
(φψ)-conformation:	aabp

Pattern:	x	x	[AFIL]	[ILY]	[DEKR]	x	[ACGV]	[EKR]	x	[FHLVY]	[L]	[AKN]	[DKPR]	[GN]	[G]	x	[FGIM]	[GMVW]	[IMV]	[akq]	[ITV]	[fgk]
Conservation:	-0.414	-0.894	-0.314	0.246	0.222	-0.730	-0.504	0.867	-1.110	-0.380	1.607	-0.015	-0.288	1.453	2.865	-0.772	-0.874	-0.712	0.780	-0.581	0.486	-0.935

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1dus_A_136	1dus	A	140	161	HRIIEEGKELLKDNGEIWVVIQ	HHHHHHHHHHEEEEEEEEEEEE	aaaaaaaaaaxxpvxbbbbbbx
1ej0_A_133	1ej0	A	145	166	ELALEMCRDVLAPGGSFVVKVF	HHHHHHHHHHEEEEEEEEEEEE	aaaaaaaaaaxxpvxbbbbxbb
1g8a_A_156	1g8a	A	158	179	KILIDNAEVYLKRGGYGMIAVK	HHHHHHHHHHEEEEEEEEEEEE	aaaaaaaaaaxxxvxbbbbxbx
1g8s_A_156	1g8s	A	158	179	EILIKNAKWFLKKGGYGMIAIK	HHHHHHHHHHEEEEEEEEEEEE	aaaaaaaaaaxxxvxbbbbxbx
1uir_A_175	1uir	A	175	196	VEFYRLVKAHLNPGGVMGMQTG	HHHHHHHHHTEEEEEEEEEEEE	aaaaaaaaaabxxvxbbbbxae

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1dus_A_136	1dus	A	MSESELENOMETHIONINE	I - 143
1dus_A_136	1dus	A	MSESELENOMETHIONINE	I - 156
1dus_A_136	1dus	A	MSESELENOMETHIONINE	W - 157
1dus_A_136	1dus	A	MSESELENOMETHIONINE	V - 158
1ej0_A_133	1ej0	A	SAMS-ADENOSYLMETHIONINE	L - 143
1ej0_A_133	1ej0	A	HGMERCURY (II) ION	L - 148
1ej0_A_133	1ej0	A	HGMERCURY (II) ION	C - 151
1ej0_A_133	1ej0	A	HGMERCURY (II) ION	R - 152
1ej0_A_133	1ej0	A	HGMERCURY (II) ION	D - 153
1ej0_A_133	1ej0	A	HGMERCURY (II) ION	L - 155
1ej0_A_133	1ej0	A	HGMERCURY (II) ION	F - 161
1ej0_A_133	1ej0	A	SAMS-ADENOSYLMETHIONINE	K - 164

Clusters included in this Subclass

CLUSTER: HE.0.16