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Information on SUBCLASS 0.1.40
Subclass Accession number: 5227
Subclass: 0.1.40 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 23.2 +/- 22.7
Average RMSD (Å) : 0.700 +/- 0.000

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: XhLc
(φψ)-conformation: aabp
Pattern: xx[AFIL][ILY][DEKR]x[ACGV][EKR]x[FHLVY][L][AKN][DKPR][GN][G]x[FGIM][GMVW][IMV][akq][ITV][fgk]
Conservation:-0.414-0.894-0.3140.2460.222-0.730-0.5040.867-1.110-0.3801.607-0.015-0.2881.4532.865-0.772-0.874-0.7120.780-0.5810.486-0.935
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dus_A_1361dus   A140161HRIIEEGKELLKDNGEIWVVIQHHHHHHHHHHEEEEEEEEEEEEaaaaaaaaaaxxpvxbbbbbbx
1ej0_A_1331ej0   A145166ELALEMCRDVLAPGGSFVVKVFHHHHHHHHHHEEEEEEEEEEEEaaaaaaaaaaxxpvxbbbbxbb
1g8a_A_1561g8a   A158179KILIDNAEVYLKRGGYGMIAVKHHHHHHHHHHEEEEEEEEEEEEaaaaaaaaaaxxxvxbbbbxbx
1g8s_A_1561g8s   A158179EILIKNAKWFLKKGGYGMIAIKHHHHHHHHHHEEEEEEEEEEEEaaaaaaaaaaxxxvxbbbbxbx
1uir_A_1751uir   A175196VEFYRLVKAHLNPGGVMGMQTGHHHHHHHHHTEEEEEEEEEEEEaaaaaaaaaabxxvxbbbbxae
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dus_A_1361dus   A     MSESELENOMETHIONINE I - 143
1dus_A_1361dus   A     MSESELENOMETHIONINE I - 156
1dus_A_1361dus   A     MSESELENOMETHIONINE W - 157
1dus_A_1361dus   A     MSESELENOMETHIONINE V - 158
1ej0_A_1331ej0   A     SAMS-ADENOSYLMETHIONINE L - 143
1ej0_A_1331ej0   A     HGMERCURY (II) ION L - 148
1ej0_A_1331ej0   A     HGMERCURY (II) ION C - 151
1ej0_A_1331ej0   A     HGMERCURY (II) ION R - 152
1ej0_A_1331ej0   A     HGMERCURY (II) ION D - 153
1ej0_A_1331ej0   A     HGMERCURY (II) ION L - 155
1ej0_A_1331ej0   A     HGMERCURY (II) ION F - 161
1ej0_A_1331ej0   A     SAMS-ADENOSYLMETHIONINE K - 164

Clusters included in this Subclass
CLUSTER: HE.0.16