ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.3.6

Subclass Accession number: 5368
Subclass: 2.3.6

PSSM

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 12

Average sequence ID (%) : 62.0 +/- 27.5
Average RMSD (Å) : 0.317 +/- 0.147

Consensus geometry

d (Å): 11

delta (°): 0-45

theta (°): 45-90

rho (°): 180-225

Consensus Sequence:	EpHpXY
(φψ)-conformation:	aababb

Pattern:	x	x	x	x	x	x	x	x	x	x	x	x	x	x
Conservation:	-0.606	-1.120	-0.706	0.556	0.473	-0.039	1.548	-0.642	-1.329	1.190	-0.642	1.907	-0.039	-0.554

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
12e8_L_183	12e8	L	183	196	KDEYERHNSYTCEA	HHHHTT-SEEEEEE	aaaaaabaxbbbbb
1a4k_A_183	1a4k	A	183	196	KADYEKHKVYACEV	HHHHTS-S-EEEEE	aaaaaabaxbbbbb
1c5c_L_183	1c5c	L	183	196	KADYEKHKVYACEV	HHHHTT--EEEEEE	aaaaaabaxbbbbb
1ce1_L_183	1ce1	L	183	196	KADYEKHKVYACEV	HHHHTT-SEEEEEE	aaaaaabaxxbbxb
1dqd_L_182	1dqd	L	182	195	KDEYERHNSYTCEA	HHHHTS--EEEEEE	aaaaaabaxbbbbb
1gaf_L_183	1gaf	L	183	196	KADYEKHKVYACEV	HHHHTT---EEEEE	aaaaaabaxbbbbb
1k6q_L_183	1k6q	L	183	196	KDEYERHNSYTCEA	HHHHTT---EEEEE	aaaaaapabxbbbb
1mex_L_183	1mex	L	183	196	KDEYERHNSYTCEA	HHHHTT--EEEEEE	aaaaaabaxbbbbb
1nj9_A_183	1nj9	A	183	196	AREWERHSSYSCQV	HHHHTT-SEEEEEE	aaaaaabaxbbbbb
1q0x_L_183	1q0x	L	183	196	ARAWERHSSYSCQV	HHHHTT--EEEEEE	aaaaaabaxbbbbb
1rzg_B_183	1rzg	B	183	196	KADYEKHKLYACEV	HHHHTT-SEEEEEE	aaaaaabaxbbbxb
1ub6_B_188	1ub6	B	188	201	KDEYERHNGYTCEA	HHHHTT---EEEEE	aaaaaababbbbbb

Clusters included in this Subclass

CLUSTER: HE.3.116

CLUSTER: HE.3.170

CLUSTER: HE.4.64