Information on SUBCLASS 2.6.5 |
Subclass Accession number: 5418
Subclass: 2.6.5 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 17.5 +/- 25.0 Average RMSD (Å) : 0.700 +/- 0.200 Consensus geometry
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Consensus Sequence: | pppcXp |
(φψ)-conformation: | aabpbb |
Pattern: | [AIK] | x | [dhr] | [ILVY] | x | [DENR] | [ETY] | [DNV] | x | x | [CGSV] | [ILV] |
Conservation: | -0.672 | -0.789 | -1.269 | 0.786 | 0.073 | 0.505 | -0.124 | 0.517 | -0.197 | 0.020 | -1.221 | 2.372 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1fl2_A_266 | 1fl2 | A | 274 | 285 | KVHVDEYDVDVI | HHHHHTS-EEEE | aaaaaabxbxxb |
1g8m_A_328 | 1g8m | A | 331 | 342 | AKIISREVSDGV | HHHHHTS-EEEE | aaaaaabxbaeb |
1htw_A_100 | 1htw | A | 100 | 111 | IRDYFNTDSICL | HHHHHSSS-EEE | aaaaaabxbbbb |
1hyu_A_266 | 1hyu | A | 274 | 285 | KAHVSDYDVDVI | HHHHHTS-EEEE | aaaaaabxbxxb |
1r1m_A_92 | 1r1m | A | 102 | 113 | AQRLSRTNIQSV | HHHHTTS-EEEE | aaaaaabxxabb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1g8m_A_328 | 1g8m | A | MSESELENOMETHIONINE | R - 336 |
1g8m_A_328 | 1g8m | A | MSESELENOMETHIONINE | E - 337 |
1g8m_A_328 | 1g8m | A | GGUANOSINE-5'-MONOPHOSPHATE | E - 337 |
1g8m_A_328 | 1g8m | A | MSESELENOMETHIONINE | V - 343 |
1g8m_A_328 | 1g8m | A | GGUANOSINE-5'-MONOPHOSPHATE | V - 343 |
1htw_A_100 | 1htw | A | MGMAGNESIUM ION | E - 113 |
1htw_A_100 | 1htw | A | ADPADENOSINE-5'-DIPHOSPHATE | E - 113 |
Clusters included in this Subclass |
CLUSTER: HE.3.163 |