Information on SUBCLASS 2.6.8 |
Subclass Accession number: 5421
Subclass: 2.6.8 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 16.7 +/- 29.1 Average RMSD (Å) : 0.433 +/- 0.153 Consensus geometry
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Consensus Sequence: | hppXXX |
(φψ)-conformation: | aabpbb |
Pattern: | [VY] | [AV] | x | x | [LY] | [LW] | [DNS] | [HQS] | [PT] | [GT] | [FQY] | x |
Conservation: | 0.687 | 0.132 | -1.528 | -1.952 | 0.687 | 1.581 | 0.274 | -0.256 | 0.479 | 0.045 | -0.150 | -1.000 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ayx_*_190 | 1ayx | - | 196 | 206 | YVIGYWDSTGF. | HHHHHTTS-EE. | aaaaaaabxbx. |
1b16_A_202 | 1b16 | A | 202 | 213 | VAELLLSHPTQT | HHHHHTTS--EE | aaaaaaabxbbx |
1gai_*_155 | 1gai | - | 165 | 175 | YVAQYWNQTGY. | HHHHHTTS-EE. | aaaaaaabxbx. |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1b16_A_202 | 1b16 | A | NAQNICOTINAMIDE ADENINE DINUCLEOTIDE 3-PENTANONE ADDUCT | L - 206 |
1gai_*_155 | 1gai | * | MANALPHA-D-MANNOSE | W - 156 |
1gai_*_155 | 1gai | * | MANALPHA-D-MANNOSE | P - 157 |
1gai_*_155 | 1gai | * | MANALPHA-D-MANNOSE | L - 158 |
1gai_*_155 | 1gai | * | MANALPHA-D-MANNOSE | R - 160 |
1gai_*_155 | 1gai | * | MANALPHA-D-MANNOSE | N - 161 |
1gai_*_155 | 1gai | * | MANALPHA-D-MANNOSE | S - 164 |
1gai_*_155 | 1gai | * | MANALPHA-D-MANNOSE | A - 167 |
1gai_*_155 | 1gai | * | MANALPHA-D-MANNOSE | Q - 168 |
1gai_*_155 | 1gai | * | MANALPHA-D-MANNOSE | Y - 169 |
1gai_*_155 | 1gai | * | MANALPHA-D-MANNOSE | W - 170 |
1gai_*_155 | 1gai | * | NAGN-ACETYL-D-GLUCOSAMINE | W - 170 |
1gai_*_155 | 1gai | * | MANALPHA-D-MANNOSE | N - 171 |
1gai_*_155 | 1gai | * | NAGN-ACETYL-D-GLUCOSAMINE | N - 171 |
1gai_*_155 | 1gai | * | MANALPHA-D-MANNOSE | Q - 172 |
1gai_*_155 | 1gai | * | NAGN-ACETYL-D-GLUCOSAMINE | Q - 172 |
1gai_*_155 | 1gai | * | NAGN-ACETYL-D-GLUCOSAMINE | T - 173 |
1gai_*_155 | 1gai | * | NAGN-ACETYL-D-GLUCOSAMINE | G - 174 |
1gai_*_155 | 1gai | * | GACDIHYDRO-ACARBOSE | Y - 175 |
Clusters included in this Subclass |
CLUSTER: HE.5.265 |