Logo
Information on SUBCLASS 2.6.8
Subclass Accession number: 5421
Subclass: 2.6.8 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 16.7 +/- 29.1
Average RMSD (Å) : 0.433 +/- 0.153

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: hppXXX
(φψ)-conformation: aabpbb
Pattern: [VY][AV]xx[LY][LW][DNS][HQS][PT][GT][FQY]x
Conservation:0.6870.132-1.528-1.9520.6871.5810.274-0.2560.4790.045-0.150-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ayx_*_1901ayx   -196206YVIGYWDSTGF.HHHHHTTS-EE.aaaaaaabxbx.
1b16_A_2021b16   A202213VAELLLSHPTQTHHHHHTTS--EEaaaaaaabxbbx
1gai_*_1551gai   -165175YVAQYWNQTGY.HHHHHTTS-EE.aaaaaaabxbx.
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b16_A_2021b16   A     NAQNICOTINAMIDE ADENINE DINUCLEOTIDE 3-PENTANONE ADDUCT L - 206
1gai_*_1551gai   *     MANALPHA-D-MANNOSE W - 156
1gai_*_1551gai   *     MANALPHA-D-MANNOSE P - 157
1gai_*_1551gai   *     MANALPHA-D-MANNOSE L - 158
1gai_*_1551gai   *     MANALPHA-D-MANNOSE R - 160
1gai_*_1551gai   *     MANALPHA-D-MANNOSE N - 161
1gai_*_1551gai   *     MANALPHA-D-MANNOSE S - 164
1gai_*_1551gai   *     MANALPHA-D-MANNOSE A - 167
1gai_*_1551gai   *     MANALPHA-D-MANNOSE Q - 168
1gai_*_1551gai   *     MANALPHA-D-MANNOSE Y - 169
1gai_*_1551gai   *     MANALPHA-D-MANNOSE W - 170
1gai_*_1551gai   *     NAGN-ACETYL-D-GLUCOSAMINE W - 170
1gai_*_1551gai   *     MANALPHA-D-MANNOSE N - 171
1gai_*_1551gai   *     NAGN-ACETYL-D-GLUCOSAMINE N - 171
1gai_*_1551gai   *     MANALPHA-D-MANNOSE Q - 172
1gai_*_1551gai   *     NAGN-ACETYL-D-GLUCOSAMINE Q - 172
1gai_*_1551gai   *     NAGN-ACETYL-D-GLUCOSAMINE T - 173
1gai_*_1551gai   *     NAGN-ACETYL-D-GLUCOSAMINE G - 174
1gai_*_1551gai   *     GACDIHYDRO-ACARBOSE Y - 175

Clusters included in this Subclass
CLUSTER: HE.5.265