Information on SUBCLASS 4.6.2 |
Subclass Accession number: 5623
Subclass: 4.6.2 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0016798 (>75 %) SCOP : 53589 (>75 %) 53590 (>75 %) 53591 (>75 %) |
Number of loops: 5 Average sequence ID (%) : 27.3 +/- 29.1 Average RMSD (Å) : 0.420 +/- 0.192 Consensus geometry
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Consensus Sequence: | XXpPphhp |
(φψ)-conformation: | aabaaabp |
Pattern: | [APS] | [CFLT] | [act] | [aiv] | [AG] | [IY] | [lv] | [iv] | [DNT] | [PQ] | [DKST] | [GLV] | [AIMV] | [HKNT] | [tv] |
Conservation: | -0.056 | -0.915 | -0.881 | -0.680 | 0.942 | 1.854 | -0.656 | -0.143 | 0.498 | 2.100 | -0.417 | -1.037 | -0.141 | -0.468 | -1.000 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ezr_A_242 | 1ezr | A | 242 | 256 | PCAVAYVIDPTVMTT | HHHHHHHH-GGGEEE | aaaaaaaabaaabxb |
1ga6_A_312 | 1ga6 | A | 314 | 327 | SFYSAISSTPSLVH. | HHHHHHHH-GGGEE. | aaaaaaaabaaabx. |
1kic_A_260 | 1kic | A | 262 | 276 | ALTAAYVVDQKVANV | HHHHHHHH-GGG-EE | aaaaaaaabaaabxb |
1q8f_A_241 | 1q8f | A | 241 | 255 | ATCIGYLINPDGIKT | HHHHHHHH-GGGEEE | aaaaaaaabaaabxb |
2mas_A_242 | 2mas | A | 243 | 257 | PCAVAYVIDPSVMTT | HHHHHHHH-GGGEEE | aaaaaaaabaaabxb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ga6_A_312 | 1ga6 | A | GOLGLYCEROL | A - 313 |
1ga6_A_312 | 1ga6 | A | GOLGLYCEROL | S - 314 |
1ga6_A_312 | 1ga6 | A | ACTACETATE ION | P - 323 |
1ga6_A_312 | 1ga6 | A | ACTACETATE ION | S - 324 |
1ga6_A_312 | 1ga6 | A | ACTACETATE ION | L - 325 |
1ga6_A_312 | 1ga6 | A | ACTACETATE ION | V - 326 |
1ga6_A_312 | 1ga6 | A | ACTACETATE ION | H - 327 |
1kic_A_260 | 1kic | A | NOSINOSINE | W - 260 |
1kic_A_260 | 1kic | A | CACALCIUM ION | D - 261 |
1kic_A_260 | 1kic | A | NOSINOSINE | D - 261 |
2mas_A_242 | 2mas | A | PIR2-(4-AMINO-PHENYL)-5-HYDROXYMETHYL-PYRROLIDINE-3,4-DIOL | D - 242 |
2mas_A_242 | 2mas | A | CACALCIUM ION | D - 242 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
2mas_A_242 | 2mas | A | S1DESCRIPTION NOT PROVIDED | D - 242 |
Clusters included in this Subclass |
CLUSTER: HE.4.202 |