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Information on SUBCLASS 2.7.1
Subclass Accession number: 565
Subclass: 2.7.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 14

Average sequence ID (%) : 11.4 +/- 16.1
Average RMSD (Å) : 0.400 +/- 0.136

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXXpXh
(φψ)-conformation: bbGabb
Pattern: [gklv][dehnqrsw][adgknrt][degknqs][cdehkqrsy][ilvy]
Conservation:-0.274-0.560-0.6990.921-0.9361.549
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a6q_*_1821a6q   -182187VMIQRVEETTEEbbGabx
1daa_A_21daa   A49LWNDQIEETTEExbGabb
1egz_A_51egz   A712VNGNKIEETTEEbbGabb
1f1b_B_1241f1b   B129134KRANDIEETTEExxGaxb
1f42_A_1861f42   A193198VHKLKYEETTEEbbGaxb
1ih7_A_6171ih7   A620625GDTDSIEETTEEbbGabb
1lvl_*_2341lvl   -238243YENGCLEETTEEbxGabb
1oac_A_1511oac   A157162LDGKHIEETTEEbbGaxx
1qdl_A_2081qdl   A213218KFDEKYEETTEEbbGabb
1r0v_A_1491r0v   A153158LSDEYVEETTEExbGabb
1rl6_A_411rl6   A4449VEGNVIEETTEExxGabx
1umd_A_2061umd   A206211YAISVDEETTEEbbGaxx
1uyp_A_3441uyp   A349354KSRDELEETTEEbbGabx
1wdn_A_181wdn   A1924KQGDLYEETTEExbGaxx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a6q_*_1821a6q   *     PO4PHOSPHATE ION R - 186
1f1b_B_1241f1b   B     ZNZINC ION F - 125
1f1b_B_1241f1b   B     ZNZINC ION C - 138
1f42_A_1861f42   A     NAGN-ACETYL-D-GLUCOSAMINE M - 189
1f42_A_1861f42   A     NAGN-ACETYL-D-GLUCOSAMINE D - 191
1f42_A_1861f42   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 198
1f42_A_1861f42   A     NAGN-ACETYL-D-GLUCOSAMINE E - 199
1f42_A_1861f42   A     NAGN-ACETYL-D-GLUCOSAMINE N - 200
1lvl_*_2341lvl   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE S - 234
1lvl_*_2341lvl   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 235
1umd_A_2061umd   A     MGMAGNESIUM ION Y - 206
1umd_A_2061umd   A     TDPTHIAMIN DIPHOSPHATE Y - 206
1umd_A_2061umd   A     MGMAGNESIUM ION A - 207
1umd_A_2061umd   A     TDPTHIAMIN DIPHOSPHATE A - 207
1umd_A_2061umd   A     MGMAGNESIUM ION I - 208
1umd_A_2061umd   A     TDPTHIAMIN DIPHOSPHATE I - 208
1umd_A_2061umd   A     COI2-OXO-4-METHYLPENTANOIC ACID I - 208

Clusters included in this Subclass
CLUSTER: HA.1.17