Information on SUBCLASS 5.16.1 |
Subclass Accession number: 5787
Subclass: 5.16.1 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 9 Average sequence ID (%) : 15.9 +/- 19.2 Average RMSD (Å) : 0.867 +/- 0.265 Consensus geometry
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Consensus Sequence: | pXGpXhpXX |
(φψ)-conformation: | aalbppabb |
Pattern: | [efkqy] | x | [AIMVY] | x | [adnr] | [deky] | [el] | [GR] | [dkrty] | x | [ailpvy] | [DHKNTY] | x | [anv] | [ailvwy] |
Conservation: | -0.294 | -0.340 | 0.375 | -0.286 | -0.347 | -0.344 | 0.322 | 3.418 | -0.366 | -0.666 | -0.489 | 0.293 | -0.627 | -0.170 | -0.478 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bu6_O_373 | 1bu6 | O | 393 | 407 | EAMQADSGIRLHALR | HHHHHHH----SEEE | aaaaaaavbbxabbx |
1bup_A_116 | 1bup | A | 129 | 143 | EIAEAYLGKTVTNAV | HHHHHHHTS---EEE | aaaaaaavbxbaxbb |
1gqv_A_23 | 1gqv | A | 28 | 42 | QVINNYQRRCKNQNT | HHHHHHHTS--SEEE | aaaaaaavbxxabbb |
1k1x_A_95 | 1k1x | A | 106 | 120 | KDYARKLGYDAKGVW | HHHHHHTT----EEE | aaaaaaavbxpabbx |
1l5x_A_70 | 1l5x | A | 75 | 89 | YLATFGLGRKYDIVL | HHHHHHHTS--SEEE | aaaaaaavbxxabbb |
1qop_B_207 | 1qop | B | 214 | 228 | AQILDKEGRLPDAVI | HHHHHHHSS--SEEE | aaaaaaavbxxabbb |
1s3x_A_116 | 1s3x | A | 129 | 143 | EIAEAYLGYPVTNAV | HHHHHHHSS---EEE | aaaaaaavbxxabbb |
1s7j_A_127 | 1s7j | A | 127 | 141 | PEYEAALGTKIYEAY | HHHHHHHTS--SEEE | aaaaaaavbxbabbb |
1v7c_A_166 | 1v7c | A | 169 | 183 | FEVVDELGDAPHYHA | HHHHHHHSS--SEEE | aaaaaaavbxxabbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1bup_A_116 | 1bup | A | PIHYDROGENPHOSPHATE ION | V - 146 |
1gqv_A_23 | 1gqv | A | ACTACETATE ION | L - 44 |
1l5x_A_70 | 1l5x | A | MSESELENOMETHIONINE | L - 76 |
1l5x_A_70 | 1l5x | A | GOLGLYCEROL | L - 76 |
1l5x_A_70 | 1l5x | A | MSESELENOMETHIONINE | A - 77 |
1l5x_A_70 | 1l5x | A | GOLGLYCEROL | A - 77 |
1l5x_A_70 | 1l5x | A | GOLGLYCEROL | T - 78 |
1l5x_A_70 | 1l5x | A | MSESELENOMETHIONINE | F - 79 |
1l5x_A_70 | 1l5x | A | MSESELENOMETHIONINE | G - 80 |
1l5x_A_70 | 1l5x | A | GOLGLYCEROL | G - 80 |
1l5x_A_70 | 1l5x | A | GOLGLYCEROL | L - 81 |
1l5x_A_70 | 1l5x | A | GOLGLYCEROL | Y - 85 |
1l5x_A_70 | 1l5x | A | MSESELENOMETHIONINE | D - 86 |
1l5x_A_70 | 1l5x | A | MSESELENOMETHIONINE | I - 92 |
1qop_B_207 | 1qop | B | PLPPYRIDOXAL-5'-PHOSPHATE | C - 230 |
1v7c_A_166 | 1v7c | A | HEY(2E)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL] PYRIDIN-4-YL}METHYL)AMINO]-5-PHOSPHONOPENT-2-ENOIC ACID | P - 185 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1gqv_A_23 | 1gqv | A | P-1P-1 PERIPHERAL SUBSITE FOR CHAIN A | R - 36 |
1gqv_A_23 | 1gqv | A | P1P1 CAYALYTIC SUBSITE FOR CHAIN A | K - 38 |
1gqv_A_23 | 1gqv | A | P-1P-1 PERIPHERAL SUBSITE FOR CHAIN A | N - 39 |
1gqv_A_23 | 1gqv | A | P-1P-1 PERIPHERAL SUBSITE FOR CHAIN A | Q - 40 |
1qop_B_207 | 1qop | B | PLPPLP BINDING SITE FOR CHAIN B | C - 230 |
Clusters included in this Subclass |
CLUSTER: HE.4.104 |
CLUSTER: HE.5.167 |