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Information on SUBCLASS 5.20.1
Subclass Accession number: 5793
Subclass: 5.20.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 15.6 +/- 15.9
Average RMSD (Å) : 0.700 +/- 0.276

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: pXhpXchXh
(φψ)-conformation: aappplpbb
Pattern: x[cnrs]x[tv][gikl][GILMV][afiy][ENQRS][agikl][ALMT][KNPQR][NPT][GN][agm][ikltv][LMV][glmv][LTV]
Conservation:-0.941-0.750-0.9860.945-1.034-0.087-0.7550.330-1.3600.2080.1111.5141.9180.200-0.6621.614-0.8160.551
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1e3j_A_2511e3j   A252269KCITIGINITRTGGTLMLHHHHHHHHHS-TT-EEEEaaaaaaaaaxxpvxbbxx
1gu7_A_2771gu7   A278295KSSTGIARKLNNNGLMLTHHHHHHHHTS-TT-EEEEaaaaaaaaaxxpvxbbbx
1h1d_A_711h1d   A7188YSAVRMARLLQPGARLLTHHHHHHHTT--TT-EEEEaaaaaaaaaxxpvxbbbb
1im8_A_1421im8   A144161ALLTKIYEGLNPNGVLVLHHHHHHHHHB-TT-EEEEaaaaaaaaaxxpvxbbbb
1nrz_A_421nrz   A4360VRRTLLRQAAPPGMKVNVHHHHHHHHT--TT-EEEEaaaaaaaaapxpvbxbbb
1qmg_A_2021qmg   A207224DNYEKVFSHMKPNSILGLHHHHHHHHHS-TT-EEEEaaaaaaaaaxxxvxbxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gu7_A_2771gu7   A     GOLGLYCEROL R - 285
1gu7_A_2771gu7   A     GOLGLYCEROL K - 286
1gu7_A_2771gu7   A     GOLGLYCEROL L - 287
1gu7_A_2771gu7   A     GOLGLYCEROL N - 288
1gu7_A_2771gu7   A     GOLGLYCEROL N - 289
1gu7_A_2771gu7   A     GOLGLYCEROL N - 290
1h1d_A_711h1d   A     SAMS-ADENOSYLMETHIONINE Y - 71
1h1d_A_711h1d   A     SAMS-ADENOSYLMETHIONINE S - 72
1h1d_A_711h1d   A     SAMS-ADENOSYLMETHIONINE A - 73
1h1d_A_711h1d   A     SAMS-ADENOSYLMETHIONINE M - 89
1h1d_A_711h1d   A     SAMS-ADENOSYLMETHIONINE E - 90
1im8_A_1421im8   A     MSESELENOMETHIONINE R - 142
1im8_A_1421im8   A     MSESELENOMETHIONINE L - 153
1im8_A_1421im8   A     MSESELENOMETHIONINE G - 157
1im8_A_1421im8   A     MSESELENOMETHIONINE V - 158
1im8_A_1421im8   A     MSESELENOMETHIONINE L - 159
1im8_A_1421im8   A     MSESELENOMETHIONINE V - 160
1im8_A_1421im8   A     MSESELENOMETHIONINE L - 161
1im8_A_1421im8   A     MSESELENOMETHIONINE S - 162
1im8_A_1421im8   A     MSESELENOMETHIONINE E - 163
1im8_A_1421im8   A     MSESELENOMETHIONINE K - 164
1qmg_A_2021qmg   A     DMV2,3-DIHYDROXY-VALERIANIC ACID D - 202
1qmg_A_2021qmg   A     APX2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE D - 202
1qmg_A_2021qmg   A     MNMANGANESE (II) ION D - 202
1qmg_A_2021qmg   A     APX2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE A - 204
1qmg_A_2021qmg   A     APX2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE Q - 205
1qmg_A_2021qmg   A     APX2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE N - 208
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gu7_A_2771gu7   A BC3SO4 BINDING SITE FOR CHAIN AR - 285
1gu7_A_2771gu7   A AC6GOL BINDING SITE FOR CHAIN AL - 287
1gu7_A_2771gu7   A AC6GOL BINDING SITE FOR CHAIN AN - 288
1gu7_A_2771gu7   A AC6GOL BINDING SITE FOR CHAIN AN - 289

Clusters included in this Subclass
CLUSTER: HE.6.102
CLUSTER: HE.7.206