ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 6.22.1

Subclass Accession number: 5887
Subclass: 6.22.1

PSSM

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 5

Average sequence ID (%) : 32.9 +/- 22.7
Average RMSD (Å) : 0.620 +/- 0.130

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 45-90

rho (°): 225-270

Consensus Sequence:	IXhLXphppG
(φψ)-conformation:	aalabppabe

Pattern:	[K]	[ST]	[T]	[FLMTV]	[AIL]	[ANRS]	[ACILV]	[IL]	[AGNQT]	[cgn]	[FL]	x	[KQR]	[AP]	[DQST]	[EGK]	[G]	[AEKQR]	[ILV]	[ILY]	[FILV]
Conservation:	1.740	0.467	1.740	-0.773	-0.279	-0.653	-0.651	0.643	-1.066	-1.257	0.286	-1.456	0.384	0.233	-0.591	-0.407	2.349	-0.578	0.403	-0.270	-0.263

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1b0u_A_45	1b0u	A	45	65	KSTFLRCINFLEKPSEGAIIV	HHHHHHHHTTSS--SEEEEEE	aaaaaaaaalabxxabebbbb
1g6h_A_46	1g6h	A	46	66	KSTLINVITGFLKADEGRVYF	HHHHHHHHTTSS--SEEEEEE	aaaaaaaaavabxxabebbbb
1ji0_A_44	1ji0	A	44	64	KTTTLSAIAGLVRAQKGKIIF	HHHHHHHHTTSS--SEEEEEE	aaaaaaaaavabxbabebbbb
1jj7_A_544	1jj7	A	544	564	KSTVAALLQNLYQPTGGQLLL	HHHHHHHHTTSS--SEEEEEE	aaaaaaaaavabbpabebbbb
1l2t_A_44	1l2t	A	44	64	KSTMLNIIGCLDKPTEGEVYI	HHHHHHHHTTSS--SEEEEEE	aaaaaaaaavabbxabebbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1b0u_A_45	1b0u	A	ATPADENOSINE-5'-TRIPHOSPHATE	K - 45
1b0u_A_45	1b0u	A	ATPADENOSINE-5'-TRIPHOSPHATE	S - 46
1b0u_A_45	1b0u	A	ATPADENOSINE-5'-TRIPHOSPHATE	T - 47
1b0u_A_45	1b0u	A	ATPADENOSINE-5'-TRIPHOSPHATE	F - 48
1b0u_A_45	1b0u	A	ATPADENOSINE-5'-TRIPHOSPHATE	E - 56
1g6h_A_46	1g6h	A	MGMAGNESIUM ION	K - 46
1g6h_A_46	1g6h	A	ADPADENOSINE-5'-DIPHOSPHATE	K - 46
1g6h_A_46	1g6h	A	MGMAGNESIUM ION	S - 47
1g6h_A_46	1g6h	A	ADPADENOSINE-5'-DIPHOSPHATE	S - 47
1g6h_A_46	1g6h	A	MGMAGNESIUM ION	T - 48
1g6h_A_46	1g6h	A	ADPADENOSINE-5'-DIPHOSPHATE	T - 48
1g6h_A_46	1g6h	A	ADPADENOSINE-5'-DIPHOSPHATE	L - 49
1g6h_A_46	1g6h	A	ADPADENOSINE-5'-DIPHOSPHATE	N - 51
1g6h_A_46	1g6h	A	ADPADENOSINE-5'-DIPHOSPHATE	L - 57
1ji0_A_44	1ji0	A	ATPADENOSINE-5'-TRIPHOSPHATE	K - 44
1ji0_A_44	1ji0	A	ATPADENOSINE-5'-TRIPHOSPHATE	T - 45
1ji0_A_44	1ji0	A	ATPADENOSINE-5'-TRIPHOSPHATE	T - 46
1ji0_A_44	1ji0	A	MSESELENOMETHIONINE	T - 47
1ji0_A_44	1ji0	A	MSESELENOMETHIONINE	L - 48
1ji0_A_44	1ji0	A	MSESELENOMETHIONINE	I - 51
1ji0_A_44	1ji0	A	MSESELENOMETHIONINE	A - 52
1ji0_A_44	1ji0	A	MSESELENOMETHIONINE	F - 64
1jj7_A_544	1jj7	A	MGMAGNESIUM ION	K - 544
1jj7_A_544	1jj7	A	ADPADENOSINE-5'-DIPHOSPHATE	K - 544
1jj7_A_544	1jj7	A	MGMAGNESIUM ION	S - 545
1jj7_A_544	1jj7	A	ADPADENOSINE-5'-DIPHOSPHATE	S - 545
1jj7_A_544	1jj7	A	MGMAGNESIUM ION	T - 546
1jj7_A_544	1jj7	A	ADPADENOSINE-5'-DIPHOSPHATE	T - 546
1jj7_A_544	1jj7	A	ADPADENOSINE-5'-DIPHOSPHATE	V - 547
1jj7_A_544	1jj7	A	ADPADENOSINE-5'-DIPHOSPHATE	Y - 555
1l2t_A_44	1l2t	A	ATPADENOSINE-5'-TRIPHOSPHATE	S - 45
1l2t_A_44	1l2t	A	ATPADENOSINE-5'-TRIPHOSPHATE	M - 47

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1b0u_A_45	1b0u	A	PLPP-LOOP	K - 45

Clusters included in this Subclass

CLUSTER: HE.6.106