ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 6.60.1

Subclass Accession number: 5925
Subclass: 6.60.1

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 3.5 (>50 %)  3.5.1 (>50 %)
GO : GO:0004067 (>50 %)  GO:0016810 (>50 %)  GO:0016811 (>50 %)
SCOP : 53773 (>50 %)  53774 (>50 %)  53775 (>50 %)

Number of loops: 3

Average sequence ID (%) : 29.8 +/- 26.6
Average RMSD (Å) : 0.933 +/- 0.404

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	XXXpXpXhhh
(φψ)-conformation:	aappbapwbb

Pattern:	[EG]	[EK]	[ET]	[A]	[FY]	[FK]	[L]	x	x	x	x	[HK]	x	[DNQ]	[KV]	[PV]	[ILV]	[LV]	x
Conservation:	-0.278	0.750	-0.029	1.509	2.363	-0.540	1.509	-0.681	-0.829	-0.980	-0.980	0.394	-0.891	-0.002	-0.560	-0.022	0.442	0.340	-1.513

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ny5_A_33	1ny5	A	33	51	GKEAYKLLSEKHFNVVLLD	HHHHHHHHHHS--SEEEEE	aaaaaaaaaabxxabbxbx
1wsa_A_96	1wsa	A	97	115	EETAFFLNLTVKSQKPVVL	HHHHHHHHHH---SS-EEE	aaaaaaaaaaxbbaxwbbx
4pga_A_103	4pga	A	104	122	EETAYFLNLVQKTDKPIVV	HHHHHHHHHH----S-EEE	aaaaaaaaaaxxbapwbbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ny5_A_33	1ny5	A	PO4PHOSPHATE ION	H - 44
1ny5_A_33	1ny5	A	PO4PHOSPHATE ION	F - 45
1ny5_A_33	1ny5	A	PO4PHOSPHATE ION	N - 46

Clusters included in this Subclass

CLUSTER: HE.5.300