Logo
Information on SUBCLASS 2.5.10
Subclass Accession number: 6146
Subclass: 2.5.10 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 54402 (>50 %)  54427 (>50 %)  
 Number of loops: 3

Average sequence ID (%) : 13.3 +/- 17.1
Average RMSD (Å) : 0.667 +/- 0.252

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 90-135 rho (°): 180-225
Consensus Sequence: XXpcXh
(φψ)-conformation: bbllbp
Pattern: [LVY]xx[FMY][GQR]xx[DE][DG][AK][IM][RTY][DG][HTW][KR]
Conservation:-0.314-1.551-1.0750.542-0.599-0.790-0.8851.6720.8200.2470.800-0.8850.882-0.4091.544
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1kgd_A_8001kgd   A800814YLEYGSHEDAMYGTKEEEEEEETTEEEEEEbabbbbblvbOebbx
1nww_A_1111nww   A117131LGVFQLTEGKITGWREEEEEEETTEEEEEEbbbbbbblvbxabbb
1sjw_A_1001sjw   A106120VHLMRIVDGKIRDHREEEEEEETTEEEEEEbbbbbxblvbxabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1kgd_A_8001kgd   A     FMTFORMIC ACID E - 802
1kgd_A_8001kgd   A     FMTFORMIC ACID Y - 803
1kgd_A_8001kgd   A     FMTFORMIC ACID G - 804
1kgd_A_8001kgd   A     FMTFORMIC ACID Y - 811
1kgd_A_8001kgd   A     FMTFORMIC ACID G - 812
1kgd_A_8001kgd   A     FMTFORMIC ACID T - 813
1nww_A_1111nww   A     HPNHEPTANAMIDE L - 114
1nww_A_1111nww   A     HPNHEPTANAMIDE I - 116
1nww_A_1111nww   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID Q - 121
1nww_A_1111nww   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID T - 128
1nww_A_1111nww   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID G - 129
1nww_A_1111nww   A     HPNHEPTANAMIDE W - 130
1nww_A_1111nww   A     HPNHEPTANAMIDE D - 132
1sjw_A_1001sjw   A     NGVMETHYL 5,7-DIHYDROXY-2-METHYL-4,6,11-TRIOXO-3,4,6,11-TETRAHYDROTETRACENE-1-CARBOXYLATE F - 101
1sjw_A_1001sjw   A     NGVMETHYL 5,7-DIHYDROXY-2-METHYL-4,6,11-TRIOXO-3,4,6,11-TETRAHYDROTETRACENE-1-CARBOXYLATE Q - 105
1sjw_A_1001sjw   A     NGVMETHYL 5,7-DIHYDROXY-2-METHYL-4,6,11-TRIOXO-3,4,6,11-TETRAHYDROTETRACENE-1-CARBOXYLATE H - 107
1sjw_A_1001sjw   A     NGVMETHYL 5,7-DIHYDROXY-2-METHYL-4,6,11-TRIOXO-3,4,6,11-TETRAHYDROTETRACENE-1-CARBOXYLATE H - 119
1sjw_A_1001sjw   A     NGVMETHYL 5,7-DIHYDROXY-2-METHYL-4,6,11-TRIOXO-3,4,6,11-TETRAHYDROTETRACENE-1-CARBOXYLATE D - 121
1sjw_A_1001sjw   A     NGVMETHYL 5,7-DIHYDROXY-2-METHYL-4,6,11-TRIOXO-3,4,6,11-TETRAHYDROTETRACENE-1-CARBOXYLATE P - 123

Clusters included in this Subclass
CLUSTER: HA.3.145