ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 3.34.1

Subclass Accession number: 6233
Subclass: 3.34.1

Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 2.3 (>50 %)  2.3.1 (>50 %)
GO : GO:0008415 (>75 %)  GO:0016746 (>75 %)  GO:0016747 (>75 %)
SCOP : 53900 (>75 %)  53901 (>75 %)  53914 (>50 %)

Number of loops: 3

Average sequence ID (%) : 49.1 +/- 13.1
Average RMSD (Å) : 0.567 +/- 0.208

Consensus geometry

d (Å): 3

delta (°): 90-135

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	FGhGhTh
(φψ)-conformation:	bbpIwbb

Pattern:	[CLW]	[GV]	[LV]	[L]	[EF]	[AG]	[F]	[G]	[GP]	[G]	[FLM]	[T]	[IVW]	[EG]	[ST]	[AV]	[LV]	[LV]	[R]
Conservation:	-0.899	-1.169	-0.336	0.544	-1.043	-0.289	1.725	1.725	-0.453	1.725	-0.571	1.135	-0.965	-0.794	-0.166	-0.630	-0.336	-0.336	1.135

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bi5_A_367	1bi5	A	367	385	WGVLFGFGPGLTIETVVLR	EEEEEEEETTTEEEEEEEE	bbbbbbbbpIwbbxbbxbb
1hnj_A_298	1hnj	A	298	316	LVLLEAFGGGFTWGSALVR	EEEEEEEETTTEEEEEEEE	xbbbbbbbpIwbbbbbbbb
1qlv_A_372	1qlv	A	372	390	CGVLFGFGPGMTVETVVLR	EEEEEEEETTTEEEEEEEE	bbbbbbbbwNwbbbbbxbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1bi5_A_367	1bi5	A	CSD3-SULFINOALANINE	G - 372
1bi5_A_367	1bi5	A	CSD3-SULFINOALANINE	F - 373
1bi5_A_367	1bi5	A	CSD3-SULFINOALANINE	G - 374
1bi5_A_367	1bi5	A	CSD3-SULFINOALANINE	P - 375
1hnj_A_298	1hnj	A	MLCMALONYL-COENZYME A	F - 304
1hnj_A_298	1hnj	A	MLCMALONYL-COENZYME A	G - 305
1hnj_A_298	1hnj	A	MLCMALONYL-COENZYME A	G - 306
1qlv_A_372	1qlv	A	CSD3-SULFINOALANINE	F - 376
1qlv_A_372	1qlv	A	CSD3-SULFINOALANINE	G - 377
1qlv_A_372	1qlv	A	CSD3-SULFINOALANINE	F - 378
1qlv_A_372	1qlv	A	CSD3-SULFINOALANINE	G - 379
1qlv_A_372	1qlv	A	CSD3-SULFINOALANINE	P - 380

Clusters included in this Subclass

CLUSTER: HA.2.158