ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.26.1

Subclass Accession number: 6313
Subclass: 4.26.1

PSSM

Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 6

Average sequence ID (%) : 19.0 +/- 23.8
Average RMSD (Å) : 1.229 +/- 0.256

Consensus geometry

d (Å): 5

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	XXpXXXhX
(φψ)-conformation:	bbaappbb

Pattern:	x	[QRT]	x	[AST]	[PRST]	x	[AEKR]	[GNP]	[ALY]	x	[FLVW]	[dknqt]	[af]	[dhkrt]
Conservation:	-0.650	0.835	-0.360	1.725	0.034	-1.595	0.710	0.656	1.341	-1.148	0.195	-0.788	0.250	-1.207

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1fvc_B_34	1fvc	B	37	50	VRQAPGKGLEWVAR	EEE-SSS-EEEEEE	bbbxaaxxxbxabb
1gx3_A_146	1gx3	A	146	159	VQQTRHEPYRLTRH	EE--SSS-EEEEEE	xbxbaFxxbbxbbb
1kqw_A_48	1kqw	A	52	65	KTLSTFRNYEVNFV	EEE-SS--EEEEEE	bbbbaabbbbbbbb
1lpj_A_48	1lpj	A	52	65	HTNSSLRNYFVKFK	EEE-SS--EEEEEE	bbbbaabbbbbbbb
1opb_A_48	1opb	A	52	65	KTNSTFRNYDLDFT	EEE-SS--EEEEEE	bbbbaabbbbbbbb
1plq_*_224	1plq	-	227	240	IRLSSEAPALFQFD	EEE-SSS-EEEEEE	bbbbaabxxbbbbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1kqw_A_48	1kqw	A	RTLRETINOL	T - 51
1kqw_A_48	1kqw	A	RTLRETINOL	K - 52
1kqw_A_48	1kqw	A	RTLRETINOL	T - 53
1kqw_A_48	1kqw	A	RTLRETINOL	L - 54
1kqw_A_48	1kqw	A	RTLRETINOL	S - 55
1kqw_A_48	1kqw	A	RTLRETINOL	F - 57
1kqw_A_48	1kqw	A	RTLRETINOL	R - 58
1kqw_A_48	1kqw	A	RTLRETINOL	N - 59
1kqw_A_48	1kqw	A	RTLRETINOL	Y - 60
1kqw_A_48	1kqw	A	RTLRETINOL	V - 62
1kqw_A_48	1kqw	A	RTLRETINOL	F - 64
1opb_A_48	1opb	A	RETRETINAL	T - 51
1opb_A_48	1opb	A	RETRETINAL	T - 53
1opb_A_48	1opb	A	RETRETINAL	N - 54
1opb_A_48	1opb	A	RETRETINAL	S - 55
1opb_A_48	1opb	A	RETRETINAL	F - 57
1opb_A_48	1opb	A	RETRETINAL	R - 58
1opb_A_48	1opb	A	RETRETINAL	N - 59
1opb_A_48	1opb	A	RETRETINAL	Y - 60
1opb_A_48	1opb	A	RETRETINAL	L - 62
1opb_A_48	1opb	A	RETRETINAL	F - 64

Clusters included in this Subclass

CLUSTER: HA.6.43