Information on SUBCLASS 5.4.7 |
Subclass Accession number: 6368
Subclass: 5.4.7 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 27.8 +/- 17.0 Average RMSD (Å) : 0.533 +/- 0.115 Consensus geometry
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Consensus Sequence: | XXDpcGXhX |
(φψ)-conformation: | bbpaalpbb |
Pattern: | [GN] | x | [AGT] | [AKL] | [D] | [KS] | [DN] | [G] | x | [AIL] | [DW] | [AIV] |
Conservation: | 0.331 | -0.947 | -0.716 | -1.062 | 1.764 | -0.038 | 0.553 | 1.764 | -1.005 | -0.658 | 0.441 | -0.428 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ga6_A_221 | 1ga6 | A | 221 | 232 | NEGLDSNGKLWA | EEEE-TTS-EEE | baexxaavxxbb |
1ozu_A_83 | 1ozu | A | 86 | 97 | NVTADKDGVADV | EEEE-TTS-EEE | bbbxxaavbbxb |
1ry2_A_555 | 1ry2 | A | 560 | 571 | GAAKDKDGYIWI | EEEE-TT--EEE | bbbbxaavpbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ga6_A_221 | 1ga6 | A | GOLGLYCEROL | N - 221 |
1ga6_A_221 | 1ga6 | A | GOLGLYCEROL | E - 222 |
1ozu_A_83 | 1ozu | A | ZNZINC ION | D - 83 |
1ry2_A_555 | 1ry2 | A | AMPADENOSINE MONOPHOSPHATE | T - 557 |
1ry2_A_555 | 1ry2 | A | AMPADENOSINE MONOPHOSPHATE | G - 558 |
1ry2_A_555 | 1ry2 | A | AMPADENOSINE MONOPHOSPHATE | D - 559 |
1ry2_A_555 | 1ry2 | A | AMPADENOSINE MONOPHOSPHATE | I - 571 |
Clusters included in this Subclass |
CLUSTER: HA.6.160 |