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Information on SUBCLASS 5.28.1
Subclass Accession number: 6407
Subclass: 5.28.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 2

Average sequence ID (%) : 5.9 +/- 0.0
Average RMSD (Å) : 1.500 +/- 0.000

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: RhhphhhXX
(φψ)-conformation: bbppllpp_
Pattern: [AQ][IT][VY]x[CS][TV][R][GW][AY][DT][GY][FY][AV][MQ][DP][TY][AW]
Conservation:-0.750-0.750-0.250-1.0000.250-0.2502.5000.750-0.750-0.250-0.7502.250-0.5000.0000.250-0.500-0.250
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ors_B_921ors   B92108ATYFCVRGYDYFAMDYWEEEEEEEE-GGG-EEEEexbbbbxxxpvvxxabb
1pl3_A_791pl3   A7995QIVSSTRWATGYVQPTAEEEEEEEE-STTS--EEbxbbbxbbbbvvbpxbp
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1pl3_A_791pl3   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 90
1pl3_A_791pl3   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 91
1pl3_A_791pl3   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 92
1pl3_A_791pl3   A     HEMPROTOPORPHYRIN IX CONTAINING FE P - 93

Clusters included in this Subclass
CLUSTER: HA.6.75