Information on SUBCLASS 4.2.7 |
Subclass Accession number: 647
Subclass: 4.2.7 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 10.0 +/- 11.6 Average RMSD (Å) : 0.640 +/- 0.261 Consensus geometry
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Consensus Sequence: | XpppcXhX |
(φψ)-conformation: | bbaagpbb |
Pattern: | x | x | [fimt] | [dy] | [DEKNS] | [HNQS] | [DGS] | [anr] | [ILPTV] | x | [qtwy] | [gim] | [EHQ] |
Conservation: | 0.279 | -0.905 | -0.730 | 0.492 | 0.497 | 1.055 | 1.462 | -0.638 | -0.379 | -1.387 | -0.642 | -0.883 | 1.779 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a1x_*_77 | 1a1x | - | 77 | 89 | RYMDNNSRLWQIQ | EEEETTS-EEEEE | bbbxaavxbbxxa |
1gso_A_267 | 1gso | A | 274 | 286 | LMIDKQGNPKVIE | EEEETT--EEEEE | bbxxaavxxbxab |
1jpm_A_25 | 1jpm | A | 35 | 47 | RITYDSGAVGWGE | EEEETTS-EEEEE | bbbbaagxbbbbb |
1k3x_A_53 | 1k3x | A | 55 | 67 | LTHFSNDLTLYSH | EEEETTS-EEEEE | bxxbaavxbxxbb |
1oh0_A_96 | 1oh0 | A | 105 | 117 | MRFDEHGRIQTMQ | EEE-TTS-EEEEE | bbbxaavbxabbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1jpm_A_25 | 1jpm | A | GOLGLYCEROL | G - 41 |
1jpm_A_25 | 1jpm | A | GOLGLYCEROL | A - 42 |
1jpm_A_25 | 1jpm | A | GOLGLYCEROL | V - 43 |
1jpm_A_25 | 1jpm | A | GOLGLYCEROL | G - 44 |
1jpm_A_25 | 1jpm | A | GOLGLYCEROL | W - 45 |
1oh0_A_96 | 1oh0 | A | EQUEQUILENIN | L - 99 |
1oh0_A_96 | 1oh0 | A | EQUEQUILENIN | V - 101 |
1oh0_A_96 | 1oh0 | A | EQUEQUILENIN | D - 103 |
1oh0_A_96 | 1oh0 | A | EQUEQUILENIN | M - 105 |
1oh0_A_96 | 1oh0 | A | EQUEQUILENIN | M - 116 |
1oh0_A_96 | 1oh0 | A | EQUEQUILENIN | A - 118 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1oh0_A_96 | 1oh0 | A | AC1EQU BINDING SITE FOR CHAIN A | D - 103 |
1oh0_A_96 | 1oh0 | A | AC1EQU BINDING SITE FOR CHAIN A | M - 116 |
Clusters included in this Subclass |
CLUSTER: HA.3.152 |
CLUSTER: HA.5.91 |