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Information on SUBCLASS 10.4.1
Subclass Accession number: 6570
Subclass: 10.4.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 33.3 +/- 24.8
Average RMSD (Å) : 0.471 +/- 0.206

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: hXGPXcphhpcXXh
(φψ)-conformation: bbpppgbaapgpbb
Pattern: [ACGV][AMTV][FIL]x[GM][KP][dkpq][DGR][HST][ANPV][FLWY][ADE][GNS]x[IKLMT][FVY][krs][lv]
Conservation:-0.650-0.3750.664-1.8180.9052.149-0.782-0.2550.296-0.7360.9200.5890.921-1.287-0.9531.049-0.463-0.174
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1e12_A_871e12   A87104GMIEMPAGHALAGEMVRSEEEEB-TTSTTBT-EEEEbbbbxxpgxaapvbxbxb
1fzy_A_341fzy   A3754GTFLGPPGTPYEGGKFVVEEEE--TTSTTTT-EEEEbbbxxxxvbaaxvxbbbb
1j7d_A_451j7d   A4865GMIIGPPRTNYENRIYSLEEEE--TTSTTTT-EEEEbbbxpwxvbaapvbbbbb
1j7d_B_341j7d   B3754VVIAGPQDSPFEGGTFKLEEEE--TTSTTTT-EEEEbbbxpppvxaapvxbbxb
1u9a_A_361u9a   A4360CAIPGKKGTPWEGGLFKLEEEE--TTSTTTT-EEEEbbbxxxpvbaapgxbxxb
2aak_*_322aak   -3855AVIFGPDDTPWDGGTFKLEEEE--TTSTTTT-EEEEbbbxxpxlbaapvxbxxb
2e2c_*_612e2c   -6481ATLDGPKDTVYESLKYKLEEEE--TTSTTTT-EEEEbbbxppxvbaaxvxbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e12_A_871e12   A     MPG1-MONOOLEOYL-RAC-GLYCEROL G - 94
1e12_A_871e12   A     MPG1-MONOOLEOYL-RAC-GLYCEROL H - 95
1e12_A_871e12   A     MPG1-MONOOLEOYL-RAC-GLYCEROL A - 96

Clusters included in this Subclass
CLUSTER: HA.9.16