Information on SUBCLASS 10.4.1 |
Subclass Accession number: 6570
Subclass: 10.4.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 7 Average sequence ID (%) : 33.3 +/- 24.8 Average RMSD (Å) : 0.471 +/- 0.206 Consensus geometry
|
Consensus Sequence: | hXGPXcphhpcXXh |
(φψ)-conformation: | bbpppgbaapgpbb |
Pattern: | [ACGV] | [AMTV] | [FIL] | x | [GM] | [KP] | [dkpq] | [DGR] | [HST] | [ANPV] | [FLWY] | [ADE] | [GNS] | x | [IKLMT] | [FVY] | [krs] | [lv] |
Conservation: | -0.650 | -0.375 | 0.664 | -1.818 | 0.905 | 2.149 | -0.782 | -0.255 | 0.296 | -0.736 | 0.920 | 0.589 | 0.921 | -1.287 | -0.953 | 1.049 | -0.463 | -0.174 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1e12_A_87 | 1e12 | A | 87 | 104 | GMIEMPAGHALAGEMVRS | EEEEB-TTSTTBT-EEEE | bbbbxxpgxaapvbxbxb |
1fzy_A_34 | 1fzy | A | 37 | 54 | GTFLGPPGTPYEGGKFVV | EEEE--TTSTTTT-EEEE | bbbxxxxvbaaxvxbbbb |
1j7d_A_45 | 1j7d | A | 48 | 65 | GMIIGPPRTNYENRIYSL | EEEE--TTSTTTT-EEEE | bbbxpwxvbaapvbbbbb |
1j7d_B_34 | 1j7d | B | 37 | 54 | VVIAGPQDSPFEGGTFKL | EEEE--TTSTTTT-EEEE | bbbxpppvxaapvxbbxb |
1u9a_A_36 | 1u9a | A | 43 | 60 | CAIPGKKGTPWEGGLFKL | EEEE--TTSTTTT-EEEE | bbbxxxpvbaapgxbxxb |
2aak_*_32 | 2aak | - | 38 | 55 | AVIFGPDDTPWDGGTFKL | EEEE--TTSTTTT-EEEE | bbbxxpxlbaapvxbxxb |
2e2c_*_61 | 2e2c | - | 64 | 81 | ATLDGPKDTVYESLKYKL | EEEE--TTSTTTT-EEEE | bbbxppxvbaaxvxbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1e12_A_87 | 1e12 | A | MPG1-MONOOLEOYL-RAC-GLYCEROL | G - 94 |
1e12_A_87 | 1e12 | A | MPG1-MONOOLEOYL-RAC-GLYCEROL | H - 95 |
1e12_A_87 | 1e12 | A | MPG1-MONOOLEOYL-RAC-GLYCEROL | A - 96 |
Clusters included in this Subclass |
CLUSTER: HA.9.16 |