|
|
|
|
|
|
|
| Information on SUBCLASS 4.9.3 |
|
Subclass Accession number: 665
Subclass: 4.9.3 
Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: 
 Consensus coordinates:
|
Number of loops: 3 Average sequence ID (%) : 8.9 +/- 11.6 Average RMSD (Å) : 0.633 +/- 0.208 Consensus geometry
|
| Consensus Sequence: | XpXXhpph |
| (φψ)-conformation: | bpaalabb |
| Pattern: | x | [LWY] | [STV] | [HL] | [DNS] | [ADV] | x | [AG] | [DRS] | [EKN] | [IVW] | [AS] | [CV] | [EFL] | [KTW] |
| Conservation: | -0.796 | 0.835 | -0.294 | -0.190 | 0.835 | -1.173 | -1.424 | 1.779 | -0.545 | 0.584 | -0.043 | 1.315 | 0.963 | -1.299 | -0.545 |
| Loops included in this Subclass |
| Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
| 1hq0_A_985 | 1hq0 | A | 994 | 1008 | SYSLNADASEISVLK | EEEE-TTS--EEEEE | bbbbxaalabbbxab |
| 1k3b_A_100 | 1k3b | A | 100 | 114 | GWVHDVLGRNWACFT | EEEEETTS-SEEEEE | bbbbxaavaxbbbbb |
| 1s18_A_55 | 1s18 | A | 63 | 77 | YLTLSDSGDKVAVEW | EEEEETTSS-EEEEE | bbbbxaavabbbbbb |
| PDB ligands within a cut-off distance of 6 Å in this subclass |
| Loop | PDB | Chain | Ligands | Residue |
| 1s18_A_55 | 1s18 | A | TMNTRIS(HYDROXYMETHYL)AMINOMETHANE | L - 59 |
| 1s18_A_55 | 1s18 | A | TMNTRIS(HYDROXYMETHYL)AMINOMETHANE | K - 61 |
| 1s18_A_55 | 1s18 | A | TMNTRIS(HYDROXYMETHYL)AMINOMETHANE | Y - 63 |
| Clusters included in this Subclass |
| CLUSTER: HA.5.128 |
| For any comment or web-related incidence, send an email to the webmaster. |
|