ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 5.13.1

Subclass Accession number: 6817
Subclass: 5.13.1

PSSM

Type: AR beta-beta link
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 4

Average sequence ID (%) : 34.7 +/- 25.3
Average RMSD (Å) : 0.150 +/- 0.058

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	hhGcXhXcV
(φψ)-conformation:	bbpbappbb

Pattern:	x	[AIL]	[IV]	[G]	[GN]	[ADS]	[AGV]	[ANS]	[DN]	[LV]	[IL]	[IKV]
Conservation:	-1.238	-0.723	0.740	2.278	0.394	-0.606	-0.896	-0.379	0.708	0.210	0.488	-0.977

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1kap_P_330	1kap	P	330	341	NAIGGSGSDLLI	EEE--SS--EEE	bbbxbaxxbbbb
1kap_P_339	1kap	P	339	350	LLIGNDVANVLK	EEE--SS--EEE	bbbxbaxxbbbb
1sat_*_330	1sat	-	330	341	NAIGGSGNDVIV	EEE--SS--EEE	bbbxbaxxbbbb
1sat_*_339	1sat	-	339	350	VIVGNAANNVLK	EEE--SS--EEE	bbbxbaxxbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1kap_P_330	1kap	P	CACALCIUM ION	G - 333
1kap_P_330	1kap	P	CACALCIUM ION	G - 334
1kap_P_330	1kap	P	CACALCIUM ION	S - 335
1kap_P_330	1kap	P	CACALCIUM ION	G - 336
1kap_P_330	1kap	P	CACALCIUM ION	S - 337
1kap_P_330	1kap	P	CACALCIUM ION	D - 338
1kap_P_330	1kap	P	CACALCIUM ION	L - 340
1kap_P_339	1kap	P	CACALCIUM ION	G - 342
1kap_P_339	1kap	P	CACALCIUM ION	N - 343
1kap_P_339	1kap	P	CACALCIUM ION	D - 344
1kap_P_339	1kap	P	CACALCIUM ION	V - 345
1kap_P_339	1kap	P	CACALCIUM ION	A - 346
1kap_P_339	1kap	P	CACALCIUM ION	N - 347
1kap_P_339	1kap	P	CACALCIUM ION	K - 350
1sat_*_330	1sat	*	CACALCIUM ION	N - 337
1sat_*_339	1sat	*	CACALCIUM ION	A - 344
1sat_*_339	1sat	*	CACALCIUM ION	A - 345
1sat_*_339	1sat	*	CACALCIUM ION	N - 346

Clusters included in this Subclass

CLUSTER: AR.5.73