Information on SUBCLASS 5.2.3 |
Subclass Accession number: 707
Subclass: 5.2.3 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 8 Average sequence ID (%) : 10.4 +/- 12.9 Average RMSD (Å) : 0.487 +/- 0.083 Consensus geometry
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Consensus Sequence: | XhpXpXpph |
(φψ)-conformation: | bbpaalabb |
Pattern: | x | x | [DHNST] | x | [CDENSTW] | [aegkr] | [dekr] | x | x | [FGILV] |
Conservation: | -1.665 | 0.118 | 1.782 | -0.375 | -0.604 | -0.311 | 1.406 | 0.405 | -0.440 | -0.316 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ayx_*_205 | 1ayx | - | 205 | 214 | GFDLWEENQG | EE-TTS--EE | bxxaavabbe |
1ioo_A_162 | 1ioo | A | 169 | 178 | CFTPNADSMF | EE-TTSSSEE | bbxaavabxb |
1iqq_A_161 | 1iqq | A | 170 | 179 | CSDKSGEHFI | EE-TTSSSEE | bbxaavabxb |
1l1l_A_402 | 1l1l | A | 404 | 413 | GTNPCGEISL | EE-TT--SEE | bbxaavabxb |
1nzi_A_148 | 1nzi | A | 148 | 157 | FLHDDMKNCG | EE-TTSS-EE | bxxaavabbb |
1oke_A_337 | 1oke | A | 339 | 348 | IMDLEKRHVL | EE-TTSSSEE | bbxaavabxa |
1uzp_A_1518 | 1uzp | A | 1518 | 1527 | ELNPTRVGCV | EE-TTSSBEE | bxxaavabbb |
2hts_*_216 | 2hts | - | 216 | 225 | HWSTSGESIV | EE-TTSSSEE | bxxaavabbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ayx_*_205 | 1ayx | * | TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | L - 208 |
1ayx_*_205 | 1ayx | * | TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | W - 209 |
1ayx_*_205 | 1ayx | * | TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | E - 210 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1ayx_*_205 | 1ayx | * | NULENZYME ACTIVE SITE AND TWO CATALYTIC CARBOXYLATES. | E - 210 |
Clusters included in this Subclass |
CLUSTER: HA.5.50 |