Information on SUBCLASS 5.3.4 |
Subclass Accession number: 713
Subclass: 5.3.4 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 12.0 +/- 15.2 Average RMSD (Å) : 0.500 +/- 0.187 Consensus geometry
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Consensus Sequence: | XXXXpGpph |
(φψ)-conformation: | bbpaalpbb |
Pattern: | x | [LPTV] | [ADNTV] | [AKRS] | [DENT] | [DG] | [dkrt] | [hk] | [ltvy] | x |
Conservation: | -0.746 | -0.220 | -0.606 | 0.173 | 0.707 | 2.472 | -0.746 | 0.178 | -0.431 | -0.781 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1b5e_A_25 | 1b5e | A | 25 | 34 | VVDKTGVKTI | EE-TTS-EEE | bxxaavxxbb |
1cv8_*_156 | 1cv8 | - | 157 | 166 | IPVSNGDHYQ | EE-TTS-EEE | xwbaavxbbx |
1fp3_A_361 | 1fp3 | A | 361 | 370 | YLNREGKVAL | EE-TTS-EEE | bbxaavxxab |
1hms_*_70 | 1hms | - | 72 | 81 | ETTADDRKVK | EE-TT--EEE | bbxaavxbbb |
1odm_A_201 | 1odm | A | 201 | 210 | KTAADGTKLS | EE-TTS-EEE | bbxaavxxba |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1b5e_A_25 | 1b5e | A | DCM2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE | D - 27 |
1b5e_A_25 | 1b5e | A | DCM2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE | K - 28 |
1cv8_*_156 | 1cv8 | * | E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE | Y - 168 |
1hms_*_70 | 1hms | * | OLAOLEIC ACID | T - 74 |
1hms_*_70 | 1hms | * | OLAOLEIC ACID | A - 75 |
1hms_*_70 | 1hms | * | OLAOLEIC ACID | D - 76 |
1hms_*_70 | 1hms | * | OLAOLEIC ACID | R - 78 |
1odm_A_201 | 1odm | A | ASVDELTA-(L-ALPHA-AMINOADIPOYL)-L-CYSTEINYL-D-VINYLGLYCINE | F - 211 |
1odm_A_201 | 1odm | A | FE2FE (II) ION | F - 211 |
1odm_A_201 | 1odm | A | ASVDELTA-(L-ALPHA-AMINOADIPOYL)-L-CYSTEINYL-D-VINYLGLYCINE | H - 214 |
1odm_A_201 | 1odm | A | FE2FE (II) ION | H - 214 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1odm_A_201 | 1odm | A | AC5FE2 BINDING SITE FOR CHAIN A | H - 214 |
Clusters included in this Subclass |
CLUSTER: HA.4.108 |
CLUSTER: HA.5.95 |