Logo
Information on SUBCLASS 5.2.1
Subclass Accession number: 7444
Subclass: 5.2.1 PSSM
Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 9

Average sequence ID (%) : 6.3 +/- 8.3
Average RMSD (Å) : 0.900 +/- 0.328

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XpXXpXphp
(φψ)-conformation: bbaaabpaa
Pattern: xx[dknprt]xx[degkqs]x[DEHPST]x[ADEPQT][dekqs]xx[aegkqrs]x
Conservation:-1.0000.487-0.064-1.461-0.5300.765-0.7721.212-0.8741.8541.514-0.563-0.717-0.480-0.371
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cbf_*_701cbf   -7185VLKTAGMHLEEMVGTEEE-TT--HHHHHHHbbxaaabxaaaaaaa
1ckm_A_1541ckm   A154167.VTVSQMDLASRFFA.EE-TTS-HHHHHHH.xxaaaxxaaaaaaa
1dki_A_1581dki   A159173QINRGDFSKQDWEAQEEEGGGS-HHHHHHHxbbaaabxaaaaaaa
1gpj_A_41gpj   A822GITHKEAEVEELEKAEEETTTS-HHHHHHHebbaaabxaaaaaaa
1gq5_A_651gq5   A6578.ENVEKETHQQVVSR.EE-TTS-HHHHHHH.bxaaabxaaaaaaa
1kae_A_61kae   A620IIDWNSCTAEQQRQLEEEGGGS-HHHHHHHxxxaaaxxaaaaaaa
1nqk_A_731nqk   A7791ALRPSVTSPTVAARQEE-TTTS-HHHHHHHxbbaaabxaaaaaaa
1p16_A_1521p16   A152165.KCIIDRPLPKRLGY.EE-TTS-HHHHHHH.xxaaaxxaaaaaaa
1qau_A_701qau   A7083.RPLVDLSYDSALEV.EE-TTS-HHHHHHH.bxaaabxaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gpj_A_41gpj   A     GLUGLUTAMIC ACID H - 11
1kae_A_61kae   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE I - 7
1kae_A_61kae   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE D - 8
1kae_A_61kae   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE W - 9
1kae_A_61kae   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE S - 11
1kae_A_61kae   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE C - 12
1kae_A_61kae   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE T - 13
1kae_A_61kae   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE Q - 16
1kae_A_61kae   A     MSESELENOMETHIONINE Q - 17
1kae_A_61kae   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE Q - 17
1kae_A_61kae   A     MSESELENOMETHIONINE R - 18
1kae_A_61kae   A     MSESELENOMETHIONINE Q - 19
1kae_A_61kae   A     MSESELENOMETHIONINE L - 20
1kae_A_61kae   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE L - 20
1p16_A_1521p16   A     SEPPHOSPHOSERINE K - 152
1p16_A_1521p16   A     GGUANOSINE-5'-MONOPHOSPHATE K - 152
1p16_A_1521p16   A     SEPPHOSPHOSERINE I - 154
1p16_A_1521p16   A     SEPPHOSPHOSERINE R - 157
1p16_A_1521p16   A     GGUANOSINE-5'-MONOPHOSPHATE R - 157
1p16_A_1521p16   A     MSESELENOMETHIONINE L - 159
1p16_A_1521p16   A     SEPPHOSPHOSERINE K - 161
1p16_A_1521p16   A     GGUANOSINE-5'-MONOPHOSPHATE K - 161
1p16_A_1521p16   A     MSESELENOMETHIONINE L - 163
1p16_A_1521p16   A     GGUANOSINE-5'-MONOPHOSPHATE L - 163
1p16_A_1521p16   A     MSESELENOMETHIONINE Y - 165
1p16_A_1521p16   A     SEPPHOSPHOSERINE Y - 165
1p16_A_1521p16   A     GGUANOSINE-5'-MONOPHOSPHATE Y - 165
1p16_A_1521p16   A     MSESELENOMETHIONINE I - 166
1p16_A_1521p16   A     GGUANOSINE-5'-MONOPHOSPHATE I - 166
1p16_A_1521p16   A     MSESELENOMETHIONINE T - 167
1p16_A_1521p16   A     GGUANOSINE-5'-MONOPHOSPHATE T - 167
1p16_A_1521p16   A     MSESELENOMETHIONINE E - 168
1p16_A_1521p16   A     MSESELENOMETHIONINE N - 169
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1cbf_*_701cbf   * P-4PRECORRIN-4 BINDING SITE IN DEEP TROUGH. ALSO, LOCATION OF BOUND PHOSPHATE RESIDUE 401. PHOSPHATE PRESENT FROM CRYSTALLIZATION CONDITIONS.L - 79

Clusters included in this Subclass
CLUSTER: EH.5.26