ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 5.25.1

Subclass Accession number: 7487
Subclass: 5.25.1

Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 6

Average sequence ID (%) : 31.3 +/- 29.7
Average RMSD (Å) : 0.717 +/- 0.299

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	hXXhpXpPX
(φψ)-conformation:	bbppaabaa

Pattern:	[KLV]	[IKV]	[FIMV]	[FKV]	[NPSV]	[asv]	[ENP]	x	[DNT]	[P]	x	[ILT]	[AG]	[AKLV]	x	[ilmv]	[AGI]	[dens]	[il]	[fiv]
Conservation:	-0.193	0.267	0.350	-0.572	-0.601	-0.434	0.196	-0.526	0.356	3.813	-0.855	0.102	0.876	-0.591	-0.639	-0.278	-0.104	-0.604	-0.155	-0.408

Loops included in this Subclass

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1bxs_A_188	1bxs	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	K - 192
1bxs_A_188	1bxs	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	P - 193
1bxs_A_188	1bxs	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	A - 194
1bxs_A_188	1bxs	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	E - 195
1bxs_A_188	1bxs	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	Q - 196
1o04_A_188	1o04	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	V - 193
1o04_A_188	1o04	A	MGMAGNESIUM ION	E - 195
1o04_A_188	1o04	A	MGMAGNESIUM ION	Q - 196
1o04_A_188	1o04	A	EDO1,2-ETHANEDIOL	Y - 203

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1o9j_A_188	1o9j	A	NDANAD BINDING SITE FOR CHAIN A	K - 192
1o9j_A_188	1o9j	A	NDANAD BINDING SITE FOR CHAIN A	A - 194
1o9j_A_188	1o9j	A	NDANAD BINDING SITE FOR CHAIN A	E - 195

Clusters included in this Subclass